PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_4588_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 134aa MW: 15998.7 Da PI: 10.5674

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_4588_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.3	2.7e-27	14	63	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i+l+dl+kyF+lpi +A+k+L+v+lTvLK++CR++GI+RWPhRkiksl Neem_4588_f_3 14 ARIDLKDLEKYFDLPILEASKNLNVGLTVLKKKCREFGIPRWPHRKIKSL 63 689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.951	1	84	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-22	16	63	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MDKKKKRAAS QDVARIDLKD LEKYFDLPIL EASKNLNVGL TVLKKKCREF GIPRWPHRKI 60 KSLDGLIHEL QEVGRQKPED EDAAMAVERR RQMLEEEKES IEKKPFMEIQ KETKKFRQDI 120 FKRRHKARAL KMQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX064678	1e-60	KX064678.1 Citrus trifoliata clone 1 RWP-RK domain containing protein (RKD5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425291.2	4e-70	protein RKD5
Refseq	XP_006467075.1	4e-70	protein RKD5 isoform X1
Refseq	XP_024955266.1	3e-70	protein RKD5 isoform X2
Swissprot	O81791	5e-50	RKD5_ARATH; Protein RKD5
TrEMBL	A0A067G7S2	2e-69	A0A067G7S2_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A2H5Q490	8e-69	A0A2H5Q490_CITUN; Uncharacterized protein
TrEMBL	V4SN59	3e-69	V4SN59_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006467075.1	1e-69	(Citrus sinensis)
STRING	XP_006425291.1	5e-70	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12049	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	2e-52	RWP-RK domain-containing protein

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]