PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4688_a_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 150aa    MW: 17438.8 Da    PI: 4.7278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4688_a_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.23.5e-071938222
            AP2  2 gykGVrwdkkrgrWvAeIrdp 22
                   +y+GVr+++ +g+++AeIrd 
  Neem_4688_a_2 19 RYRGVRRRP-WGKFAAEIRDS 38
                   6********.**********3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003800.00111984IPR001471AP2/ERF domain
PROSITE profilePS5103210.2831978IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-51942IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-81940IPR001471AP2/ERF domain
PRINTSPR003671.6E-62031IPR001471AP2/ERF domain
PRINTSPR003671.6E-66080IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEEDQRRKVK EEQETTNVRY RGVRRRPWGK FAAEIRDSTR HGAPXXXXXX XXXXXXXXXX  60
XXXXXXXMRG PLAILNFPDE HISSGVXXXX XXXXXXXRAF SSSSFSVFQN EERSGGTDAG  120
KDVFEIEYLD DQLLEDLLSF EDDKNKNNNE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-111915014131Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443854.14e-32ethylene-responsive transcription factor ERF096
RefseqXP_024954058.14e-32ethylene-responsive transcription factor ERF096-like
TrEMBLA0A2H5QGW02e-29A0A2H5QGW0_CITUN; Uncharacterized protein
TrEMBLV4VUZ48e-31V4VUZ4_9ROSI; Uncharacterized protein
STRINGXP_006480089.11e-31(Citrus sinensis)
STRINGXP_006443854.11e-31(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.11e-13ERF family protein