PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4688_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 81aa    MW: 9387.86 Da    PI: 10.354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4688_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.37.6e-082042225
            AP2  2 gykGVrwdkkrgrWvAeIrdpsen 25
                   +y+G+r+++ +g+++AeIrdp+ n
  Neem_4688_f_1 20 RYRGIRRRP-WGKFAAEIRDPTRN 42
                   6********.**********8544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.6392081IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-52045IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-92043IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
METSQGGNTR NSEKGRSEVR YRGIRRRPWG KFAAEIRDPT RNAKAAALCL LWHLPLHFLM  60
LLAETVLQAE ELLREKEKVE L
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022758392.16e-18ethylene-responsive transcription factor ERF098-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.18e-11ethylene-responsive element binding factor 15