PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4866_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 649aa    MW: 69064 Da    PI: 6.6498
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4866_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.6e-09227275148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      r++WT +Ed  l+ av++ G g+W+ I r      Rt+ q+  rw++++
    Neem_4866_f_4 227 RKAWTLQEDIELITAVQKCGEGNWANILRGDFkGDRTASQLSQRWNTLR 275
                      789************************9852235************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.339222279IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-12223277IPR009057Homeodomain-like
SuperFamilySSF466893.11E-12224276IPR009057Homeodomain-like
SMARTSM007173.3E-10226277IPR001005SANT/Myb domain
PfamPF002498.2E-8227274IPR001005SANT/Myb domain
CDDcd116603.56E-13228276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MVEKPSKKQN KGFISEADIS SLLQRYTANT VLSLLQEVAQ FPGVKLDWNA LVKKTSTGIS  60
NAREYQMLWR HLAYRTHLLE KLEDEAQPLK SSLLDASGAV FCIRGIWLDL YDDDSDLEYE  120
LEAYPDVSSE ASTEAAACVK VLIASGLPSE SSLPNSSTVE APLTINIPNS QSFRASSENS  180
QPSCLMQGMN ITVPVSVQKL PLPTSTPTEG LDANGSISSN PPSRKKRKAW TLQEDIELIT  240
AVQKCGEGNW ANILRGDFKG DRTASQLSQR WNTLRKKRGN TILGSDSSGS QLSEAQLAAR  300
HAVALALDMP VKNITASCTN NTAASTSNTT TNNSVPSTAN AEASPAGSSF TQTQSQSQQG  360
AIQTKSSPMG SSGSAAKSRV PFKKIPVKSN FSADSSIRAA AVAAGARIVT SSDAASLLKV  420
AQGKNAIHIM PSGASSIKSP VAGSAPAHSE ASSSIRNVRT SLPAVPLSSN PAVTSSGLYP  480
GSVKAASPKV QHNASSEQSN TVISVPGTEL KLKPDLKAVG ETKVSDLCSV CGNEPSKEIQ  540
VDTTTLPKRE AEFKSAAAVA ENHESSSNIE MVENDQVHIN GNQDKENHQH PNDDQMVDSQ  600
VEKSENQAAV QENCELRSPN NKEAGMPTML KDECIKHLEV SRETKASNH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472453.10.0uncharacterized protein LOC102617361 isoform X1
TrEMBLA0A067GNL20.0A0A067GNL2_CITSI; Uncharacterized protein
STRINGXP_006472453.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.19e-72MYB_related family protein