PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_4910_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 239aa    MW: 26353.9 Da    PI: 10.182
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_4910_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-143882347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
    Neem_4910_f_2 38 PWTEEEHRTFLMGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 82
                     8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.6E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.565320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.5413187IPR017930Myb domain
SMARTSM007173.9E-103585IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-163787IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-123781IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-173786IPR006447Myb domain, plants
PfamPF002498.8E-123882IPR001005SANT/Myb domain
CDDcd001679.42E-103883No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCTS YKAAASSSVA GLRLFGVPWT EEEHRTFLMG LEKLGKGDWR  60
GISRNFVTTR TPTQVASHAQ KYFLRQATLN KKKQRRSSLF DMIGSSVSAG HDAVNIIPSS  120
KQLQPRDLAP IPYPSNNDES TTAAVASLVD LTTYFKRDFE SAADQCLHQS TNTVPPLQYP  180
RVPSWLNGFI DSQLPKPSKS SSPNEVAEDL ELKLATPKSL EEKKSSGKPP LLIRPIRVT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845997.12e-58PREDICTED: myb-like protein J
TrEMBLA0A2I4GQ256e-57A0A2I4GQ25_JUGRE; myb-like protein J
STRINGVIT_11s0016g02410.t011e-48(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-36MYB_related family protein