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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_5003_f_6 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | HB-other | ||||||||
| Protein Properties | Length: 2199aa MW: 246022 Da PI: 8.4143 | ||||||||
| Description | HB-other family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 39 | 1.4e-12 | 7 | 55 | 8 | 56 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
t+ q+e L +++ +++yp+++e+e+LA+ l+Lt +qV++WF +R +ek
Neem_5003_f_6 7 TPLQVEGLRRFYSEEKYPTKSEMEDLAAALDLTFKQVRTWFIEKRRREK 55
899********************************************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 13.75 | 1 | 57 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 1.4E-11 | 1 | 61 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 4.38E-12 | 5 | 55 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 3.9E-12 | 5 | 59 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 5.13E-12 | 5 | 60 | IPR009057 | Homeodomain-like |
| Pfam | PF00046 | 6.0E-10 | 6 | 55 | IPR001356 | Homeobox domain |
| SMART | SM00571 | 1.1E-8 | 386 | 445 | IPR018501 | DDT domain |
| PROSITE profile | PS50827 | 12.273 | 386 | 445 | IPR018501 | DDT domain |
| Pfam | PF02791 | 4.8E-9 | 389 | 442 | IPR018501 | DDT domain |
| Pfam | PF15612 | 4.8E-7 | 672 | 707 | IPR028942 | WHIM1 domain |
| Pfam | PF15613 | 6.2E-11 | 799 | 872 | IPR028941 | WHIM2 domain |
| SuperFamily | SSF52743 | 7.3E-29 | 1765 | 1941 | IPR000209 | Peptidase S8/S53 domain |
| Gene3D | G3DSA:3.40.50.200 | 2.4E-24 | 1802 | 1939 | IPR000209 | Peptidase S8/S53 domain |
| Pfam | PF00082 | 9.7E-15 | 1807 | 2065 | IPR000209 | Peptidase S8/S53 domain |
| Gene3D | G3DSA:3.40.50.200 | 2.4E-24 | 2051 | 2136 | IPR000209 | Peptidase S8/S53 domain |
| SuperFamily | SSF52743 | 7.3E-29 | 2053 | 2124 | IPR000209 | Peptidase S8/S53 domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006508 | Biological Process | proteolysis | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0004252 | Molecular Function | serine-type endopeptidase activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2199 aa Download sequence Send to blast |
MEVKRKTPLQ VEGLRRFYSE EKYPTKSEME DLAAALDLTF KQVRTWFIEK RRREKTDNGV 60 VLPSPSSNKL TDTHGRNLGI ITGTKMVKGR DSSIHDRDKN TFSCSLKYKH VSSMVGNEHG 120 NKKNAVLLLQ DLLTPDYILK KVFRKDGPPL GVEFDSLPSQ AFCCYKGSGN FHPALQESQR 180 ANKRRKVPKH DELDCQDFCT NRDPVKKHGM GKGLMTAWRV MNPNGGIYPT GIDTAHRRDN 240 VVPQLSTGRS QKPPLRKKRA RQLVSLLKQR RLANKQRNKK KPLIRGRQVK LDKAESLMKP 300 QREKCELALE GEISEERLNQ IAMLVDDEEL ELRELEAGPN LLTCCDHIST KGPHGCSLCR 360 DLLAKFPPNS VKMKQPFGTQ PWDSSPEVVK KLFKVFHFLY TYAATVDICS FTLDEFAQAF 420 HDKDSLLLGK IHVALLKLLL SDVETELSRG RFAHLSVSCK FLALLHSVSV ENQEFFVEFW 480 NKSLNPLTWT EILRQVLVAA GFGSKQGSLR KESLSKEMNL MVKYGLRPGT LKGELFRILL 540 EQGNDGLKVF QLARSSQIAE LNLASTTEEV ELLISSTLSS DITLFEKISP SAYRLRFNSL 600 KETSDYESDT EYSGSVDDNS NDRDTCNSGD DSECDSQIRS QRRLKLVNFH KSKNNMLTVY 660 NEIDESHRGE MWLLGLMEGE YSDLTIDEKL NALVALIDLV SAGSSIRIED PIKTIAESIP 720 SVHHYGSGAK IKRALPNQHR LPRPSWVHEF HGVKEARASQ ELRPVDSSSL LSKSCGREKS 780 SSSDKHANTE VSSDLHPMQS VYLGSDRRFN RYWLFLGPCN AYDPGHKRVY FESSEDGQWE 840 VIDTEEALRA LLSVLDDRGR REALLIESLE KREAFLCHAM SSRLVNNAES WHLTQSDQSE 900 LDMVREDSSS PVSDVDNNLA LIEVAKDSLR SCGAIVLEVG KKGEEQNRKW NRLQEFDVWI 960 WNHFYLNLNA VKHGRRSYLD ALTRCESCHD LYWRDEKHCK RCHTTFELDF NLEERYAIHA 1020 ATCRGKGDHI GSKHKILSSQ LQSLKAAVHA IEVHYHMAVC FDVDTTFHIS EMKHTVLPTS 1080 VMPEDALVGV WTKSAHRLWA KRLRRTSSLA ELLQVVADFV SAINEDWLYQ WNVQIANIVM 1140 EEIIACFPAM PQTSSALALW LVKLDALIAP YLEQVNELLS NRSSSGLVLQ QDAALKLHNS 1200 SIAASFALLS FPDILLALVV AAIFHSGATD DDKQGEYSPS PQQISILQDV VKGRSATDSR 1260 VRRYTRSFSG FAAWLSSEEL LATKYPDSRV YELAKGNARG GVPSARIAVC ITSNKYCLTV 1320 ISFQPSVMLL LMALTSFPSS DAALIGAFHA VEKDLFTMQS PGNGGPFALS TRGIAPWILS 1380 LGAGSFDRRS IDQIILGNGK ILTASFCSIF YITNPRATIL KSEAVKETAA PVAVSFSVCG 1440 PNGIAPEILK VRHNLKHLYF RKPVVKAVDP GLVYEVAKAD YIAMHRSVNI TKSGKCPEPI 1500 KSSAKDLNYP TMAVQVESNK AFKLDFPRRV RNVGVSNTTY EAEITSTSQV NATVEPSIVS 1560 FISWKQYQQI LWPLLHCFGG TRNVRSPLVV IHVHFSTSQQ NAPDHCLLTC HYVLRRPSRM 1620 QLITQELEAN TVSFNFLSDR QEVASVITTH IRWKMKQHLD ELTIVSPSHN NYLNYRSLLL 1680 DFVPSISASF SFLYFSSILS VIVAVIGILS AGDEQVYIVY MGPLPKYEYS ALPHHISILE 1740 QVVNGRICCV ETVTNACSHE ALSVFPSGTY HLQTTRSWDF MGFAENVKRN PTVESDVIVG 1800 VVDGGIWPKD YTGHGTHTGS TAAGNKVSDV TFYGLVKGNT RGGVPSARIA VYSVCDSFMC 1860 TATEILAAFD DAIAEVVDII TCSLGPIIVN KLEDDTVTIG AFHAVEKGIL TVQSAGNSGP 1920 VARKMTRNAI NAFKTNETKF AITYGKQSSN CVDGNVRICS RDCVEKKSSK DKIVLCDFDR 1980 FTYPFGETIS VGAKGTTLLG FCDNNNESSV VPLPASTLRN IRDHNTLISY LNSKKNPQGT 2040 ILRSEVPKNR DAPVVASFSS RGPNLFPPEI LKVWQHLLSF QLTILHLEWN LNSTSVSWQM 2100 NATKHRDRKF AYGAGHVNPV KAVNPGLVYE VTKEDHMALL SSMNNTYFSK CPNHTAKVLQ 2160 KISITLQWQF KLKKTSHSKL ISQGRLEMLV CPTLPTNQK |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3vta_A | 3e-56 | 1288 | 2140 | 1 | 491 | Cucumisin |
| 3vta_B | 3e-56 | 1288 | 2140 | 1 | 491 | Cucumisin |
| 4yn3_A | 3e-56 | 1288 | 2140 | 1 | 491 | Cucumisin |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. May prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing. {ECO:0000250|UniProtKB:F4HY56}. | |||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AP004469 | 4e-49 | AP004469.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT15D01, TM0004a, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006447893.2 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
| Refseq | XP_006469383.1 | 0.0 | homeobox-DDT domain protein RLT3 | ||||
| Refseq | XP_006469384.1 | 0.0 | homeobox-DDT domain protein RLT3 | ||||
| Refseq | XP_024046871.1 | 0.0 | homeobox-DDT domain protein RLT3 isoform X1 | ||||
| Swissprot | F4JRF5 | 0.0 | RLT3_ARATH; Homeobox-DDT domain protein RLT3 | ||||
| TrEMBL | A0A067EIJ0 | 0.0 | A0A067EIJ0_CITSI; Uncharacterized protein | ||||
| STRING | XP_006469383.1 | 0.0 | (Citrus sinensis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM9638 | 21 | 25 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G12750.1 | 0.0 | Homeodomain-like transcriptional regulator | ||||
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