PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5017_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 344aa MW: 38278.6 Da PI: 7.855

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5017_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	24.7	5e-08	245	291	17	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 17 ArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 A+rsR RK+++i+eLe+ v++L+ae ++ ele l+++ l +e+ Neem_5017_f_1 245 AQRSRVRKLQYIAELERNVQALQAEGSEVSAELEFLNQQNLILSMEN 291 89***********************************9998887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.2E-4	234	293	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.37E-17	236	284	No hit	No description
Gene3D	G3DSA:1.20.5.170	3.1E-8	245	287	No hit	No description
SuperFamily	SSF57959	7.97E-6	245	287	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MANSRGSSNI RNSLYSGKHA ALLPPKSPFP SISPAYTDYV PSGVIGPKAV QKPREGNIHH 60 QRTSSESLLM EEQPSWLDDL LNEPETPVRR GGHRRSSSDS YAYIDLINSS NIDSAAQDEY 120 RYKHLVSVPS WGPQDIDYHK DNRHGPFYNE VNTVKSKNRA WESPMNALPH PSSLPSAKEN 180 VVLQNSGSPR AAREADGVPS TASEKLETAE AGSHDPKSSS EKKDNSHTKP SASETDTKRA 240 KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILSME NKALKQRLES 300 LAQEQLIKCL SDLFLLLEVA LTGGLIRNFI LFYPLNGREN YGKA

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MANSRGSSNI RNSLYSGKHA ALLPPKSPFP SISPAYTDYV PSGVIGPKAV QKPREGNIHH  60
QRTSSESLLM EEQPSWLDDL LNEPETPVRR GGHRRSSSDS YAYIDLINSS NIDSAAQDEY  120
RYKHLVSVPS WGPQDIDYHK DNRHGPFYNE VNTVKSKNRA WESPMNALPH PSSLPSAKEN  180
VVLQNSGSPR AAREADGVPS TASEKLETAE AGSHDPKSSS EKKDNSHTKP SASETDTKRA  240
KQQFAQRSRV RKLQYIAELE RNVQALQAEG SEVSAELEFL NQQNLILSME NKALKQRLES  300
LAQEQLIKCL SDLFLLLEVA LTGGLIRNFI LFYPLNGREN YGKA

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM448620	3e-36	AM448620.2 Vitis vinifera contig VV78X254698.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006431745.1	0.0	uncharacterized protein At4g06598
Refseq	XP_006431746.1	0.0	uncharacterized protein At4g06598
Swissprot	Q8W3M7	7e-70	Y4598_ARATH; Uncharacterized protein At4g06598
TrEMBL	V4T0T2	0.0	V4T0T2_9ROSI; Uncharacterized protein
STRING	XP_006431745.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3360	24	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58110.2	1e-100	bZIP family protein

Publications ? help Back to Top
Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4. DNA Res., 2001. 8(6): p. 285-90 [PMID:11853315]