PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5082_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 238aa MW: 26127.8 Da PI: 6.2932

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5082_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.3	0.00012	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Neem_5082_f_1 78 YTCTFCRREFRSAQALGGHMNVH 100 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.47E-6	75	105	No hit	No description
Pfam	PF13912	1.8E-5	78	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0066	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.157	78	105	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MATELGLLSL SQLQQLASQS QQNQHQHQQN HSLASAASAS WMLNPKQAPQ DDDDSWEVRA 60 FAEDTGNIMG TTWPPRSYTC TFCRREFRSA QALGGHMNVH RRDRARLHQT RPPGSINMPT 120 SSSTSSSTVL IPTQEFATNG GLCLLYQLPN PNGVFTHTTM TACAIDSSST LLSISPYPPN 180 NLINFPVNPL ELNSSLCYST KDPSTSTNNN SNNVNNSNES AIEELDLELR LGHRSTPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1njq_A	1e-13	73	100	2	29	superman protein
2l1o_A	1e-13	73	100	2	29	Transcriptional regulator SUPERMAN
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006385648.1	1e-104	transcriptional regulator SUPERMAN
TrEMBL	A0A061G496	1e-103	A0A061G496_THECC; Palmate-like pentafoliata 1 transcription factor
STRING	EOY24017	1e-103	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5284	26	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17810.1	2e-43	C2H2 family protein