PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5178_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

LBD

Protein Properties

Length: 163aa MW: 18056.2 Da PI: 7.0027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5178_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	141.1	3.6e-44	10	108	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++ +++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l+ el++ Neem_5178_f_1 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLHEVLPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIKLQRELDA 105 7*********************************************************************************************99 PP DUF260 97 lke 99 +++ Neem_5178_f_1 106 TNA 108 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.427	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-43	10	107	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLHEVLP 60 HQREDAVNSL AYEAEARMKD PVYGCVGAIS VLQRQVIKLQ RELDATNADL IRYACNEMPA 120 ATSSQFGRRN SGHGEGAFEQ NSGFYFPSHW TNNDGREGGE GSM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-65	3	118	4	119	LOB family transfactor Ramosa2.1
5ly0_B	1e-65	3	118	4	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002300051.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467046.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467049.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467052.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467061.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467064.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467066.1	5e-97	LOB domain-containing protein 25
Refseq	XP_024467071.1	5e-97	LOB domain-containing protein 25
Swissprot	Q8L8Q3	7e-71	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	B9GI56	1e-95	B9GI56_POPTR; Uncharacterized protein
STRING	POPTR_0001s35280.1	2e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-73	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]