PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5183_f_7
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 227aa    MW: 25383.3 Da    PI: 4.4986
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5183_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.61.1e-3971071100
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrr+C++dC++apyf+ +q + +fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++e++
  Neem_5183_f_7   7 SCGACKFLRRRCTNDCIFAPYFCYDQaATHFAAVHKVFGASNVSKLLLHLPVQNRSDAAITISYEALARMRDPIYGCVAHIFALQQQVANLQEEIE 102
                    6************************9789******************************************************************9 PP

         DUF260  96 llkee 100
                    +l+++
  Neem_5183_f_7 103 VLENH 107
                    98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7256108IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTGLGSSCGA CKFLRRRCTN DCIFAPYFCY DQAATHFAAV HKVFGASNVS KLLLHLPVQN  60
RSDAAITISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEVLENHMAN HLIGVVYGGN  120
SQAPNEPCDQ SYFSPDLDAM NTLYYQNQQP DQLLLNHEGN INVSQAFGGQ MNTELPSLQG  180
WEEQNFLPDS SPNDALRTLD GMDQENFVYK PWFDINGNAA NLRDPTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-3431247127LOB family transfactor Ramosa2.1
5ly0_B3e-3431247127LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.22e-95LOB domain-containing protein 29
TrEMBLA0A2H5Q3621e-128A0A2H5Q362_CITUN; Uncharacterized protein
TrEMBLV4TGP21e-128V4TGP2_9ROSI; Uncharacterized protein
STRINGXP_006435636.11e-129(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.13e-58LOB domain-containing protein 33