PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5254_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 264aa    MW: 31449.9 Da    PI: 4.835
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5254_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.92.6e-2991431129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                    +p GfrF+Ptdeel+ e L++kv+g++++++ + i ++d+y+++P +++  ++++ +++e ++++ +++ +      + + ++g W+atg+ k+++
  Neem_5254_f_1   9 MPTGFRFNPTDEELI-ELLERKVSGQDMHFHGHfILQTDVYNLDPDNFQwdQNLALSNNERFYYCLKENDS------REVSNHGWWRATGHVKKIY 97 
                    699************.99*********9998878**************864466678899******98753......347789************* PP

            NAM  94 sk..kgelvglkktLvfy........kgrapkgektdWvmheyrle 129
                    ++  k+ lvg kk L+f+        + r++++ kt+W+mheyrle
  Neem_5254_f_1  98 VNynKQVLVGFKKPLTFHrfrdyqdvETRRQNAIKTNWIMHEYRLE 143
                    99766777**********888877776899999***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-322157IPR003441NAC domain
PROSITE profilePS5100533.8569157IPR003441NAC domain
PfamPF023655.3E-1710142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLMTEMMMMP TGFRFNPTDE ELIELLERKV SGQDMHFHGH FILQTDVYNL DPDNFQWDQN  60
LALSNNERFY YCLKENDSRE VSNHGWWRAT GHVKKIYVNY NKQVLVGFKK PLTFHRFRDY  120
QDVETRRQNA IKTNWIMHEY RLESYSTEWR LCRIKYKGKP SIQEEVVENT SFPTLAEQRQ  180
PPQSFQPISE ANFSHFPGGE SQNNQQDSLQ VNNISENEPS NSSDLILQME ADFSYPCYDH  240
FEGDQLQQYA DSPEQLFPSI WSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-17716418174NAC domain-containing protein 19
3swm_B3e-17716418174NAC domain-containing protein 19
3swm_C3e-17716418174NAC domain-containing protein 19
3swm_D3e-17716418174NAC domain-containing protein 19
3swp_A3e-17716418174NAC domain-containing protein 19
3swp_B3e-17716418174NAC domain-containing protein 19
3swp_C3e-17716418174NAC domain-containing protein 19
3swp_D3e-17716418174NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024950105.12e-83NAC domain-containing protein 83-like
TrEMBLB9HH641e-68B9HH64_POPTR; Uncharacterized protein
STRINGXP_006495018.13e-80(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.12e-21NAC domain containing protein 58