PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5261_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 341aa    MW: 37903.4 Da    PI: 6.6323
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5261_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.38e-1345101155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa+a++ a++k++g
  Neem_5261_f_1  45 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAARAYDLAALKYWG 101
                    57*******************99998898888888********************98 PP
2AP241.24e-13133178755
            AP2   7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    r+++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Neem_5261_f_1 133 RRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 178
                    89999*******99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.31E-1545111IPR016177DNA-binding domain
PfamPF008471.1E-845101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-1346110IPR001471AP2/ERF domain
PROSITE profilePS5103218.946109IPR001471AP2/ERF domain
SMARTSM003809.8E-2246115IPR001471AP2/ERF domain
PRINTSPR003673.7E-64758IPR001471AP2/ERF domain
PROSITE profilePS5103216.871127186IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-15128188IPR016177DNA-binding domain
PfamPF008472.8E-9133178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-15134187IPR001471AP2/ERF domain
SMARTSM003803.6E-20134192IPR001471AP2/ERF domain
CDDcd000181.28E-20134188No hitNo description
PRINTSPR003673.7E-6168188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAKTSQKNSS AAANSSSTAS VANPSKKTKR TRKSVPQESP PQRSSIYRGV TRHRWTGRYE  60
AHLWDKNCWN ESQNKKGRQG AYDDEEAAAR AYDLAALKYW GQETILNFPL SNYEEELKEM  120
EGQSKEEYIG SLRRHHHNGR WEARIGRVFG NKYLYLGTYA TQEEAATAYD MAAIEYRGLN  180
AVTNFDLSRY IKWLRPNNQQ NPNPTPSNSQ QNSKNVDGSQ IPNLNHDMGL GFSSQQQQQS  240
VTSAPSSQSV GGSGGGSGSS ASSALGLLLQ SSKFKEMLEK TSAADCLSAS PEAAPTRRSF  300
PDDIQTYFDC QDSDNYTEGD DIIFGELNSF ISPIFHCELD N
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-171AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-171AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-103AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A061G9U91e-169A0A061G9U9_THECC; AP2 domain-containing transcription factor, putative
STRINGEOY261531e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-71ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]