PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5394_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 255aa MW: 28723.1 Da PI: 8.32

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5394_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.8	1.1e-28	89	149	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+r+ ed+++++ tYeg Hnhe Neem_5394_f_1 89 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMAasGCPVKKKVQRCGEDESFLVATYEGVHNHE 149 58*************************999**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.6E-29	80	150	IPR003657	WRKY domain
PROSITE profile	PS50811	26.257	84	151	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-25	85	150	IPR003657	WRKY domain
SMART	SM00774	2.5E-32	89	150	IPR003657	WRKY domain
Pfam	PF03106	1.3E-23	90	149	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MDSHNSTQEK VEELQERLEQ VLKENENLRS MVEVMNNHCN ILQARIQEAR AYSSDFNNIN 60 GEKAQIPLAN GKTTRILVKT DSRDNSLIVK DGYQWRKYGQ KVTKDNPSPR AYFRCSMAAS 120 GCPVKKKVQR CGEDESFLVA TYEGVHNHEV HSLLGQSFSS SPKTSTMANN VHSRTDQTTD 180 PFGSDITLDL TLSGASQENQ RTSQNILPES NNNKRKKKME EYVASLTRDP NFTIALAEAV 240 ASSITELPRP TRRMP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	74	150	1	73	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006483475.1	1e-103	WRKY transcription factor WRKY76
TrEMBL	A0A0A7NNK3	1e-104	A0A0A7NNK3_9ROSI; WRKY40
STRING	XP_006483475.1	1e-103	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15610	10	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31800.2	1e-41	WRKY DNA-binding protein 18