PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5403_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 368aa MW: 40839.1 Da PI: 6.3527

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5403_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00057	256	294	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR ri ++ LrellP++ + a++ ++YIk Lq Neem_5403_f_1 256 RRLRIAERVRALRELLPHS-----VEGNQAAVMDDIIDYIKFLQ 294 999*************9.....6889************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.708	244	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-7	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.63E-4	256	298	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.0E-7	257	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEGLNDVENL LWLMSSNFGV NANNDVHGPG DEPNQHFAMA AGKSANQPNP LPLPQWSHCQ 60 KTPRSYVDFL AESSTFLEHA TGADMLETIT SPIGGTKSVY GGSEIQTELL FNNLGSPCGY 120 IPADPSLDMD VSKVRFQNPY NEVTSANNYM SFQPQILPQS SAKILQQNHT SGRQELHEEN 180 RNVSQLYPRV KVSPSFFLSE QHSGGSRQKS GASDRVSITP FLTIAHSSGI TLKLNSKSLA 240 LAYFSSPEVL FLIQYRRLRI AERVRALREL LPHSVEGNQA AVMDDIIDYI KFLQLQVKEL 300 SRSRLGGQRA SVPFVFLEGY GHYVFNGQTT NEPLEEMLGK LLKMNPSAAS ELLERRGLYI 360 MPMSLTEG

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEGLNDVENL LWLMSSNFGV NANNDVHGPG DEPNQHFAMA AGKSANQPNP LPLPQWSHCQ  60
KTPRSYVDFL AESSTFLEHA TGADMLETIT SPIGGTKSVY GGSEIQTELL FNNLGSPCGY  120
IPADPSLDMD VSKVRFQNPY NEVTSANNYM SFQPQILPQS SAKILQQNHT SGRQELHEEN  180
RNVSQLYPRV KVSPSFFLSE QHSGGSRQKS GASDRVSITP FLTIAHSSGI TLKLNSKSLA  240
LAYFSSPEVL FLIQYRRLRI AERVRALREL LPHSVEGNQA AVMDDIIDYI KFLQLQVKEL  300
SRSRLGGQRA SVPFVFLEGY GHYVFNGQTT NEPLEEMLGK LLKMNPSAAS ELLERRGLYI  360
MPMSLTEG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480103.1	1e-131	uncharacterized protein LOC102621977
Refseq	XP_024043332.1	1e-131	uncharacterized protein LOC18049794
TrEMBL	A0A2H5NLD1	1e-128	A0A2H5NLD1_CITUN; Uncharacterized protein
STRING	XP_006480103.1	1e-130	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	9e-21	LJRHL1-like 2