PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5458_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 202aa MW: 19990.1 Da PI: 8.8661

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5458_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	61.9	1.2e-19	2	34	29	61
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkks 61 Pr+fCk+CrryWt+GG+lr++PvGgg+rkn k+ Neem_5458_f_1 2 PRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKR 34 9****************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-12	1	33	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	17.634	1	33	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-15	2	33	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MPRHFCKSCR RYWTHGGTLR DIPVGGGTRK NAKRCRTVTS TTSNITGNGS AGQDYPLHAT 60 PVLVPFQGAS AQFCGANLKG NNSSVGVCGN GSSSFASLLN PQAPGFLALG GFGLGLGSGF 120 VGDVGFAGLG RGVWGLTGVG DVGASVGANV GGGGNGNSNG GAGGMGNNAW QFENGEGTTS 180 FGGADCFAWP DLAISTPGNG LK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC212845	3e-47	AC212845.1 Populus trichocarpa clone POP021-P21, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006425808.1	2e-67	dof zinc finger protein DOF3.4
Refseq	XP_006466668.1	2e-67	dof zinc finger protein DOF3.4
TrEMBL	A0A067GIA8	6e-67	A0A067GIA8_CITSI; Uncharacterized protein
STRING	XP_006466668.1	8e-67	(Citrus sinensis)
STRING	XP_006425808.1	8e-67	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	9e-23	OBF binding protein 1