PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5530_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 303aa    MW: 34696 Da    PI: 10.053
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5530_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.000315271221
                   EETTTTEEESSHHHHHHHHH CS
        zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                   +C++C+ ++s+ +n+k+Hi 
  Neem_5530_f_1 52 VCTICNVPCSSAYNYKQHID 71
                   7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.76E-94684No hitNo description
SMARTSM004516.6E-44882IPR003604Zinc finger, U1-type
PfamPF128743.3E-65275No hitNo description
SuperFamilySSF576673.27E-789122No hitNo description
SMARTSM004519.5E-590124IPR003604Zinc finger, U1-type
PfamPF128744.2E-794117No hitNo description
SuperFamilySSF576675.95E-8135171No hitNo description
SMARTSM004516.2E-6136170IPR003604Zinc finger, U1-type
PfamPF128744.4E-8140163No hitNo description
SMARTSM004517.8182206IPR003604Zinc finger, U1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MSASQSPDSS PNPRLSGMQR QTTASIAECP SSQLPQPLYG NPVHANQTDN IVCTICNVPC  60
SSAYNYKQHI DGRKHKAKLE ELKFDGKLAN KQRWCQVCKV WCMDDILFKM HLNGKKHKGE  120
LQKARCGSKD SGEIAKQQKW CPVCQVWCMD DTLFKMHLNG KKHKGELQRA RYGSKSSGEI  180
AKQEKWCELC DLWCNGKKHK GELQRARYGS KSSGEIAKQE KWWELCDLWC PNGDAFKLHL  240
DGKIHVLRLH GNQKKRRVRP NGDAFKLHLD GKIHVLRLHV NQKKRRVENL GSCTGKPDQK  300
ERK