PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5599_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 136aa MW: 15864.5 Da PI: 9.6086

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5599_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	2e-08	18	55	2	40
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsK 40 r + n++Er+RR ++++ f +L llP+a +++++K +K Neem_5599_f_1 18 RINRNMIERKRRTHMKDLFTKLFNLLPTA-QNSKEKIEK 55 7899************************8.466666777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.734	16	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.07E-8	17	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-7	18	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-4	18	55	No hit	No description
Pfam	PF00010	1.8E-5	18	55	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MEGKKKEESL NQGSNLARIN RNMIERKRRT HMKDLFTKLF NLLPTAQNSK EKIEKMRERK 60 QVLLNGEQEF EPVIDIKYSL EHSTLEVIII CESKKNLMLH QVISVLEEEG AEAAISSRIG 120 IETSRVDERL KKLIIF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	26	30	KRRTH

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	5e-12	bHLH family protein