PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5604_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 170aa MW: 19457.6 Da PI: 10.1378

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5604_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.6	7.1e-11	10	59	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+ n E++RR ++++ + +L +l+ ++ Kls ei+ +A+ YI +Lq Neem_5604_f_1 10 RAQRNVKEKNRRTEMRDLLLKLASLITPQ----PSKLSVPEIVGQATSYIMQLQ 59 7789********************996....38****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.7E-12	5	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.617	8	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.5E-8	10	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.0E-10	10	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-5	10	63	No hit	No description
SMART	SM00353	9.2E-6	14	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MPRPTSSEWR AQRNVKEKNR RTEMRDLLLK LASLITPQPS KLSVPEIVGQ ATSYIMQLQK 60 RKESLNRRRE LLRGDHASSS SSSRPRILPI INITNLDSIL EVNLICGLTN RNIMLYEIIS 120 VLEDEGAEVI DATQLNQCDR VIYIIKSKAI IPRIGLETSR VQERLQELVL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024046481.1	2e-55	transcription factor bHLH167
TrEMBL	A0A2H5PEV7	6e-54	A0A2H5PEV7_CITUN; Uncharacterized protein
TrEMBL	V4UBF6	6e-54	V4UBF6_9ROSI; Uncharacterized protein
STRING	XP_006446341.1	1e-54	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2382	21	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	1e-35	bHLH family protein