PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_563_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 192aa    MW: 21636.1 Da    PI: 6.8639
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_563_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00037130152123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C+ C+++F++   L  H  +H
  Neem_563_f_1 130 YECKTCNRTFPSFQALGGHRASH 152
                   99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.4E-6128157No hitNo description
PfamPF139121.4E-13129154IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.637130157IPR007087Zinc finger, C2H2
PROSITE patternPS000280132152IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MDNMDEVHEE ASMRSNKDLT SIVKGKRTKR QRPQSPIPFV VSSGEIDHNK NITSPAVSSA  60
EEYLDSTEED EDMANCLILL AQCQSRESPK RCMDQEEMGG QIHSKFSSRR FLEVPQSSAG  120
TGKTAGYYVY ECKTCNRTFP SFQALGGHRA SHKKPKAMNN EERLIKSHQF LVSSDEEDGN  180
FRNRKGECVA HT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691ESPKRC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436528.12e-61zinc finger protein ZAT5
RefseqXP_006485347.12e-61zinc finger protein ZAT5-like
TrEMBLA0A2H5PQ594e-60A0A2H5PQ59_CITUN; Uncharacterized protein
TrEMBLV4SPQ14e-60V4SPQ1_9ROSI; Uncharacterized protein
STRINGXP_006485347.16e-61(Citrus sinensis)
STRINGXP_006436528.16e-61(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.19e-39C2H2 family protein