PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5658_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 130aa    MW: 14717.7 Da    PI: 6.5119
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5658_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.19.3e-08726222
            AP2  2 gykGVrwdkkrgrWvAeIrdp 22
                   +y+GVr+++ +g+Wv+eIr+p
  Neem_5658_f_1  7 RYRGVRQRH-WGSWVSEIRHP 26
                   69******9.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.914770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-10727IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLCY MASLQMTKSS TNETQKAPTS HAISANGIAV  60
KGSEMGTQLP EKRPLVVQED TEPSWVVKKA QVETAQQFKP LEDDHIEQMI EELLDYGSIE  120
LCSVVPTQAL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450317.13e-39ethylene-responsive transcription factor ERF003
RefseqXP_006483447.14e-39ethylene-responsive transcription factor ERF003
TrEMBLA0A067FJG78e-38A0A067FJG7_CITSI; Uncharacterized protein
TrEMBLA0A2H5NW048e-38A0A2H5NW04_CITUN; Uncharacterized protein
TrEMBLV4UBY17e-38V4UBY1_9ROSI; Uncharacterized protein
STRINGXP_006483447.11e-38(Citrus sinensis)
STRINGXP_006450317.11e-38(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-19ERF family protein