PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5839_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CAMTA
Protein Properties Length: 1362aa    MW: 153566 Da    PI: 6.1778
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5839_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1128.82.2e-4059231118
           CG-1  31 ktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                     ++   gsl+L++rk vr fr+DG++w+kk+dgktv+E+he++K g+++vl+cyYah+een++f+r +yw+Leeel++ivlvhylevk
  Neem_5839_f_1   5 SNNQLGGSLFLFDRKAVRCFRRDGHNWRKKQDGKTVKEAHERIKAGSIDVLHCYYAHGEENENFRRCSYWMLEEELSHIVLVHYLEVK 92 
                    566678*******************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010769.3E-39192IPR005559CG-1 DNA-binding domain
PROSITE profilePS5143756.838197IPR005559CG-1 DNA-binding domain
PfamPF038594.3E-33691IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.0E-5438530IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.17E-15443528IPR014756Immunoglobulin E-set
PfamPF018333.6E-5443528IPR002909IPT domain
CDDcd002041.78E-12628737No hitNo description
SuperFamilySSF484031.04E-16633739IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-16636746IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.759645739IPR020683Ankyrin repeat-containing domain
PfamPF127966.4E-7650740IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.95678710IPR002110Ankyrin repeat
SuperFamilySSF525402.92E-8844901IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155.9850872IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.261852880IPR000048IQ motif, EF-hand binding site
PfamPF006120.042854871IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0093873895IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.139874898IPR000048IQ motif, EF-hand binding site
PfamPF006122.3E-4876894IPR000048IQ motif, EF-hand binding site
PfamPF105511.8E-2212561343IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1362 aa     Download sequence    Send to blast
MAETSNNQLG GSLFLFDRKA VRCFRRDGHN WRKKQDGKTV KEAHERIKAG SIDVLHCYYA  60
HGEENENFRR CSYWMLEEEL SHIVLVHYLE VKGNRRNANR IKVAKGTAPF FHETKETTTN  120
SKVHSYQVPW QNTDTTFFNS AQIPKYEDDE SDNYQGKFSY VPGAEFISPA QADKHVGAND  180
ARLTYDHSEN LDFPSWEDVL EDSALGVGSH PIASISSYEP DNVGNVAKQW HEMLGDLFTN  240
SFVSWLVERP ETCCFIQITD ELRGAVRTCR ISCIRVLSKM KFYKLQICYI SVFWHLWLSD  300
AERGYLLKSD LESKVSIEGK SIYSSAIKQH LFDGFMEEGV KIDGFPQWPS KEVDVKESNM  360
QPSSDGETVK RENWVHDSSE ISFSQWLSKE VDVKESNMQS SSDGYWETVK RENWVHDSSN  420
SAEAHLNSYV LSPSLTQHQL YSIIDFSPNW AFVGSEIKVL ITGRFLISQQ EAENCKWACM  480
FGEVEVPAEI VAGGVICCQT PLKNVGRVPF YVTCSNRLAC SEVHEFEYLA NHVQDVDTVD  540
NCSDVSGESL RMRFEKLLCL SSVSTPNCDS SYLNDISQPK SKISSLLKEE SDSRNQILKL  600
TSVEKFSSEQ VKEKLLEKPL KEKLHVWLLQ KAAEGGKGPS VLDQGGQGVL HFAAALGYNW  660
ALEPTVVAGA NINFRDVNGW TALHWAAYCG RECTVASLIS LGAAPGALSD PTPKYPWGQT  720
PADLAASVGH KGLAGYLAES DLSSHLSAIN LHKQDGDAAE MNEAKVVQTV FQRSPTPIGD  780
GDLPYELSLK DSLAAVNNAA EAAAHIFQLF RVRSFREKQL KGYGDHEFGI SDAFSLLAVK  840
SHEAGHHDEP VHTAAKRIQD KFRGWKARKE FLTIRQRIIK IQAHVRGHQV RKSYEKIVWS  900
VGIMEKVILR WRRKGSGLRG FKSEALTGGG SSMLDTSLKE DDFDFLKEGR KQKEERLQEA  960
LSHVMSMAQY PEARDQYHRL LNIVNKIQET KALVLNNSEE TTDFDCHLIE ATALLDDDML  1020
TALKDHNSQS KEDFMEDCAQ GVGSQPFHPP SPSTQPDTCK QGHEILGQLY TSSFSIREEF  1080
GSHLRIQGES KGTTSIESTD VGSESVMDYT NEFTYNEGRK LGSDDDWMLE VVCGVHNHPI  1140
TKPLEGRSYA GSLSKEETSL VIDMSKSMVP PKDILLTLKN RDANNTSTIK QIYNARLRYN  1200
KVIGMTERSQ IQQLVNKLSE HKYIEGRRSF VNPDVINDIF WAHPVSVDLL HAFPYILLMD  1260
CTYKTNRYNL PLLEIIGVTS TNMTFAIAFA YLESGLEDNY VWALEKLRNI MDNNALPTII  1320
LSDKDLALMK AIQRVFPTTK HLIDMGKVYS ELECGGTVFK RR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428204.10.0calmodulin-binding transcription activator 3
TrEMBLA0A2H5Q4G50.0A0A2H5Q4G5_CITUN; Uncharacterized protein
STRINGXP_006428204.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86012535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1