PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5870_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 736aa MW: 80744.8 Da PI: 6.5079

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5870_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	326.6	4.7e-100	374	735	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l++ + + p ++ ++ +++ ++ a+k+fsevsP+++f ++t Neem_5870_f_4 374 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLMN--NPVT-NPPLRSPTPFDVIFKMGAYKVFSEVSPLIQFLNFT 466 679************************************************9..3343.34555555678******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl..e 190 +Nqa+lea++ ++r+Hi+Dfdi+ G+QW++++q+L R+ +g+psl+iT+++sp+++++ el ++e+L++fA+e+gv+fe +vl ++l++ Neem_5870_f_4 467 CNQALLEALDDADRIHIVDFDIGFGAQWASFMQELPMRSnRGTPSLKITAFASPSTHHHVELGLMRENLTQFANEIGVSFELDVLNFDSLDQTsyA 562 **********************************9899***************************************99988887224 PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286 l Lr +++EalaVn+ + + +++ +l+s +L++v++lsPk+vv +++ +d+++ +F e++l+al+ y l++sl+a + ++ +k+E Neem_5870_f_4 563 LPILRSSENEALAVNFPI--WTSANQPSALPS----LLRFVRQLSPKIVVSSDRGCDRSDLPFPEHILHALQSYINLLESLDAV-NVTPDALNKIE 651 56799999****99..555556666666....*****************************************665.45779999* PP GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+ll+++i++ v ++ ++ W+ + +aGF+p+++s+++++qa++++++++++g++ve++++slvl+W++r+L+s+SaWr Neem_5870_f_4 652 RFLLQPRIESTVLGGLRA----PDRMPLWKTLFASAGFSPITFSNFTETQAECVVKRTPVRGFQVEKRQASLVLCWQRRELISASAWR 735 ***********99998....89999**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	45.804	347	715	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-97	374	735	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence Send to blast
MRRSQSPPTS ASTLSSSLNN TTNTTNTDNT PTIPQEPVAP LLNNERKDEW ATELQPIQSG 60 LEVITPGGGG RCGLGLEDWE SMLSESSQEQ SILRWIAGDV DDSPFGLKQL LQSGGNGNGN 120 GHNSLVDFDG NAGCGLGIVD QASNFESIGG GGGLASGNVI STGVTNLGAY SGSGFLSNNN 180 GNGKIGPSSG FVNHKVVSGV ELNSNNNCNM QNTIFGSTAN NSMPLAPVSL SPGMIYQQSQ 240 NFVETPEEKP QILNPQILMN HQQQHHQNPN FLLPLGAYPQ QQEHHHHPHL LQPQPKRHNP 300 GGSLDLSSHH VPKPPFSDPG HEFLLRNHQQ QMGFPQNVQF HPQHLQQKNL MVSTKQRVLG 360 PGSDEVARQQ HALLDQLYKA AELVGTGNFS HAQGILARLN HQLSPVGKPL QRAAFYFKEA 420 LQLLLMNNPV TNPPLRSPTP FDVIFKMGAY KVFSEVSPLI QFLNFTCNQA LLEALDDADR 480 IHIVDFDIGF GAQWASFMQE LPMRSNRGTP SLKITAFASP STHHHVELGL MRENLTQFAN 540 EIGVSFELDV LNFDSLDQTS YALPILRSSE NEALAVNFPI WTSANQPSAL PSLLRFVRQL 600 SPKIVVSSDR GCDRSDLPFP EHILHALQSY INLLESLDAV NVTPDALNKI ERFLLQPRIE 660 STVLGGLRAP DRMPLWKTLF ASAGFSPITF SNFTETQAEC VVKRTPVRGF QVEKRQASLV 720 LCWQRRELIS ASAWRC

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence Send to blast

MRRSQSPPTS ASTLSSSLNN TTNTTNTDNT PTIPQEPVAP LLNNERKDEW ATELQPIQSG  60
LEVITPGGGG RCGLGLEDWE SMLSESSQEQ SILRWIAGDV DDSPFGLKQL LQSGGNGNGN  120
GHNSLVDFDG NAGCGLGIVD QASNFESIGG GGGLASGNVI STGVTNLGAY SGSGFLSNNN  180
GNGKIGPSSG FVNHKVVSGV ELNSNNNCNM QNTIFGSTAN NSMPLAPVSL SPGMIYQQSQ  240
NFVETPEEKP QILNPQILMN HQQQHHQNPN FLLPLGAYPQ QQEHHHHPHL LQPQPKRHNP  300
GGSLDLSSHH VPKPPFSDPG HEFLLRNHQQ QMGFPQNVQF HPQHLQQKNL MVSTKQRVLG  360
PGSDEVARQQ HALLDQLYKA AELVGTGNFS HAQGILARLN HQLSPVGKPL QRAAFYFKEA  420
LQLLLMNNPV TNPPLRSPTP FDVIFKMGAY KVFSEVSPLI QFLNFTCNQA LLEALDDADR  480
IHIVDFDIGF GAQWASFMQE LPMRSNRGTP SLKITAFASP STHHHVELGL MRENLTQFAN  540
EIGVSFELDV LNFDSLDQTS YALPILRSSE NEALAVNFPI WTSANQPSAL PSLLRFVRQL  600
SPKIVVSSDR GCDRSDLPFP EHILHALQSY INLLESLDAV NVTPDALNKI ERFLLQPRIE  660
STVLGGLRAP DRMPLWKTLF ASAGFSPITF SNFTETQAEC VVKRTPVRGF QVEKRQASLV  720
LCWQRRELIS ASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-31	392	735	22	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477215.1	0.0	scarecrow-like protein 27
TrEMBL	V4T0B5	0.0	V4T0B5_9ROSI; Uncharacterized protein
STRING	XP_006477215.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16534	8	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-130	GRAS family protein