PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5877_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 335aa    MW: 37598.7 Da    PI: 5.8849
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5877_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.8e-16104155155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Neem_5877_f_5 104 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 155
                    89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.378569IPR001471AP2/ERF domain
SMARTSM003807.4E-41775IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-93071IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-83370IPR001471AP2/ERF domain
PfamPF008475.1E-12104155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18104165IPR016177DNA-binding domain
CDDcd000189.91E-25104165No hitNo description
PROSITE profilePS5103218.334105163IPR001471AP2/ERF domain
SMARTSM003801.2E-24105169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17105164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGFTHVSGIV GQEDMKLICG IRIAGMNHRI RKEDKNNFAG AYDDEEAAAH AYDLAALKYW  60
GQDTILNFPL STYEKELKDM EGQTREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA  120
RIGRVFGNKY LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNHQPNVI  180
NPVHHHFNPN QTVDTTPSSS SSAINGNTYH LQDLNLSFFN NNNNNHTTST AATVSELPPL  240
TDKPVRPVNA TSALGLLLQS SKFKEMMEMT SSDADHCSST PLMESDRLQC SFPEDIQTYF  300
GGCQDSGSYG EGDDDIFFRE LNSLVPPMFQ CDFDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453545.11e-141AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN48e-72AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1R3HF251e-153A0A1R3HF25_COCAP; Uncharacterized protein
STRINGXP_006474614.11e-141(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.25e-62AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]