PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5892_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 210aa    MW: 23748.9 Da    PI: 6.914
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5892_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86e-111665555
                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
            HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                    +++E++RR+++++ +++L +llP +  ++sk  +   +   +A++YIksLq
  Neem_5892_f_5 16 RKIIEKNRRNHMKNLYSQLNSLLPDD--QTSKEtVPLPDQIDEAINYIKSLQ 65
                   689**********************6..255556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.14E-7969No hitNo description
PROSITE profilePS5088811.1151164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-111383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-111484IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-71665IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-51770IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MERPKQCSSK APKVERKIIE KNRRNHMKNL YSQLNSLLPD DQTSKETVPL PDQIDEAINY  60
IKSLQRKLKE CNEKKERLAR SKRSYSCTSS SNYDKSTASS KAPQIQIHEM GSNLEVILTT  120
GVDNQFIFCE VIRILHEDGA DVVNANFSVV GNTIFHIIRA EIGDTMFGFG AAKITERLNR  180
LVNGSSSEAE LQTPELWDFG IDPGCWEVLN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447292.12e-86transcription factor bHLH162
RefseqXP_006469875.22e-86transcription factor bHLH162-like
TrEMBLA0A067ERQ31e-92A0A067ERQ3_CITSI; Uncharacterized protein
STRINGXP_006469875.15e-86(Citrus sinensis)
STRINGXP_006447292.16e-86(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-37bHLH family protein