PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_5920_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 113aa    MW: 13177.6 Da    PI: 11.5512
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_5920_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-124795155
            AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   ++++G+ +++ +grW+  I +      r + +lg+++ a+eA++ +++ + kl+ 
  Neem_5920_f_4 47 KKFRGIQQRP-WGRWATKIIHK-----RIQLWLGTYDIAKEARRVYDNTAIKLRA 95
                   59********.*****999994.....6************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.0E-211112IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000188.05E-1947102No hitNo description
SMARTSM003808.0E-1848109IPR001471AP2/ERF domain
PROSITE profilePS5103217.00348103IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1448103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-1848103IPR001471AP2/ERF domain
PRINTSPR003674.5E-74960IPR001471AP2/ERF domain
PRINTSPR003674.5E-76985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MKVLRLKRYV NEVCIELTPS KNSNTAALTS NRKRITTDVS VCRLPIKKFR GIQQRPWGRW  60
ATKIIHKRIQ LWLGTYDIAK EARRVYDNTA IKLRAPNTVT NFSTPPVKEI KKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017610252.17e-32PREDICTED: ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2P5XNR12e-30A0A2P5XNR1_GOSBA; Uncharacterized protein
STRINGGorai.006G200400.12e-30(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-26cytokinin response factor 4