PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_5945_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

M-type_MADS

Protein Properties

Length: 254aa MW: 28814.5 Da PI: 4.996

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_5945_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.7	1.9e-20	55	99	2	46
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 + +nks qvtfskRr+g++ KA EL++LC+aev +i+fs++gk+ Neem_5945_f_3 55 KLQNKSSLQVTFSKRRTGLFSKAMELCILCGAEVGIIVFSPNGKI 99 5689***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.7E-31	46	105	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	24.544	46	106	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-26	47	122	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.06E-32	47	119	No hit	No description
PRINTS	PR00404	2.0E-19	48	68	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-22	57	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-19	68	83	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-19	83	104	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MLPSITTEKE ELKPKPLSIT MSGSNTNNNG DSSSNNENQK TRKATRGRQK IEIKKLQNKS 60 SLQVTFSKRR TGLFSKAMEL CILCGAEVGI IVFSPNGKIF VVGHPDFDTV LNRYLDENHY 120 EQAAAVPCVQ QHNREYEEAL IELDMEKKKA KMIEEEKEKN KSGRAWWEES IDGMGIEELE 180 EYVKAMKKLR SEVQSRVNEM MMLNDYLMPN NINIMNQEDG FGNIVSSSNN EDISVNGGCI 240 ATDFDFGEHF LNNS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3kov_B	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3kov_I	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3kov_J	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3p57_A	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3p57_B	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3p57_C	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3p57_D	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3p57_I	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
3p57_J	2e-14	47	118	1	72	Myocyte-specific enhancer factor 2A
5f28_A	2e-14	47	118	2	73	MEF2C
5f28_B	2e-14	47	118	2	73	MEF2C
5f28_C	2e-14	47	118	2	73	MEF2C
5f28_D	2e-14	47	118	2	73	MEF2C
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422729.2	4e-95	agamous-like MADS-box protein AGL23
TrEMBL	V4U9K6	7e-94	V4U9K6_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006422729.1	1e-94	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15814	7	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-33	AGAMOUS-like 62