 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Neem_6017_f_2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 336aa MW: 37398.3 Da PI: 10.0579 |
| Description |
BBR-BPC family protein |
| Gene Model |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 390.2 | 3e-119 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllven 89
mdd g+re r+k+ +y+ a + + +++ +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a++erdn++++l+++en
Neem_6017_f_2 1 MDDGGHREngRHKAeQYKAAqgQWFMHHQpsMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYREN 96
9*****999*****9999554444444432146*************************************************************** PP
GAGA_bind 90 sla...salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
sl+ s++p+g+q+++g+k+i++ qq +++ p++++ ++ re+++++a +++ +ea ++++ k rak+p k +++kk++k+ +k k+
Neem_6017_f_2 97 SLTgnmSSCPPGCQISRGVKHIHHPQQhVHHlPHMSEASYA-REMHTSDAVQVSPGSSEAAKSRRGK---RAKEPS--KVMSPNKKTSKPPRKIKR 186
*999999********************55558999998887.9999888888776555444444433...333332..223344444455555555 PP
GAGA_bind 181 esader.............................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
e++d + sk+++k + l+ln+v++Dest+P+P+CsCtG+lrqCYkWGnGGWqSaCCtt++S+yPLP++
Neem_6017_f_2 187 ENEDLNkivfgksnewksthdldgggddvnkqlaaSKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAV 282
5555333566666788899***************************************************************************** PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+++r+aR++grKmS++af+klL +LaaeG+dls+pvDLkdhWAkHGtn+++ti+
Neem_6017_f_2 283 PNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 336
*****************************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAEQYKAA QGQWFMHHQP SMKQIMAIMA ERDAAIQERN LALSEKKAAI 60
AERDMAFLQR DTAIAERNNA ILERDNAIAS LQYRENSLTG NMSSCPPGCQ ISRGVKHIHH 120
PQQHVHHLPH MSEASYAREM HTSDAVQVSP GSSEAAKSRR GKRAKEPSKV MSPNKKTSKP 180
PRKIKRENED LNKIVFGKSN EWKSTHDLDG GGDDVNKQLA ASKSDWKGQV LGLNQVTFDE 240
STMPPPACSC TGVLRQCYKW GNGGWQSACC TTSLSMYPLP AVPNKRHARV GGRKMSGSAF 300
NKLLTRLAAE GHDLSHPVDL KDHWAKHGTN RYITIK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
