PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6017_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 582aa    MW: 63802.8 Da    PI: 7.123
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6017_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1383.5e-12382440563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  ++ +l+  +a l+s++
  Neem_6017_f_3 382 KRAKRILANRQSAARSKERKMRYIAELEQKVQTLQTEATTLSAQVTMLQRDSAGLTSHN 440
                    9**************************************************99999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-17378442IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944380443IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1708.1E-12382437No hitNo description
SuperFamilySSF579593.66E-11382433No hitNo description
PfamPF001709.9E-10382440IPR004827Basic-leucine zipper domain
CDDcd147031.06E-22383434No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MQKLESSPSS IAKPVYSGSQ MGQFSQNLSP ESYKRPGIPP SHPNNSISLP YSQMMSSLPS  60
SNAGSSHFRS LSQPSVFSLD SLPPLSPSNP LTYRESSSIS HISDLNSNNV CGEERVGNSH  120
GLSIPSPVSR VNPSRVGENL PPRRGHRRSS SDIPLGFSAM IQSSPQLIPI GTKGVLDRSV  180
SVRENSGIEK PIQLVKRESE WNNNKDCGSN NAEGMGERKS EGEVVDDLFS EYMNLDNIDT  240
LNSSGTEDKD LDSRASGTKT NGCESSDNEV ESRANGNSIG LIGTSSSISS EKREGIKRSA  300
SGEIAPTVRH YRSVSMDSYI GDMHFDDESP KLPLASQLSP GSSIDGNLAR ISLELNGEFN  360
EAELKKILAN DKLAEIALSD PKRAKRILAN RQSAARSKER KMRYIAELEQ KVQTLQTEAT  420
TLSAQVTMLQ RDSAGLTSHN NELKFRLQAM EQQAQLKDAL NEALAAEVQR LKLAAAEISG  480
EAHLSNRMAQ QLSINNQIYQ VQNQQPNRVN AYQMPRQQSQ QQNGEAEHQQ SKRMIVARVQ  540
DGQANISFMS SRINNLFLLF PYRTSAEQAD DSSKGTRWAG QH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473613.10.0transcription factor RF2a-like isoform X2
RefseqXP_007017723.10.0PREDICTED: uncharacterized protein LOC18591502
TrEMBLA0A1R3IXX90.0A0A1R3IXX9_COCAP; Uncharacterized protein
STRINGXP_006473613.10.0(Citrus sinensis)
STRINGEOY149480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42242757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-120bZIP family protein