PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6040_a_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 118aa MW: 13562.8 Da PI: 10.3378

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6040_a_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	52.4	1.8e-16	68	114	1	48
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 + pGfrF+Ptd el+++yLkkk+eg+++ + evi+e++i+++ePwdLp Neem_6040_a_4 68 MFPGFRFSPTDVELISYYLKKKIEGSENCV-EVISEIEICRYEPWDLP 114 579**********************877.99************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.23E-17	58	116	IPR003441	NAC domain
PROSITE profile	PS51005	18.516	68	118	IPR003441	NAC domain
Pfam	PF02365	6.1E-7	70	111	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MGARRSKKRL QILSLLSLAK VTKKRRKSNR KDRNRIGATI EEERKSCKLE NMAGVSRETQ 60 MSIAASSMFP GFRFSPTDVE LISYYLKKKI EGSENCVEVI SEIEICRYEP WDLPGSLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	26	KKRLQILSLLSLAKVTKKRRK
2	22	26	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006424149.1	4e-35	NAC domain-containing protein 89
Refseq	XP_006481513.1	3e-35	NAC domain-containing protein 89
Refseq	XP_012078968.1	3e-35	NAC domain-containing protein 89
Swissprot	Q9XIN7	2e-25	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	A0A2H5Q9F2	2e-34	A0A2H5Q9F2_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006481513.1	1e-34	(Citrus sinensis)
STRING	XP_006424149.1	1e-34	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7967	13	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	1e-27	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]