PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_624_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 209aa    MW: 22891.7 Da    PI: 9.7506
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_624_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.91.7e-1542123184
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                   +W++  v  L+ea+++++   +r+klk+++Weev++++      ++  ++++qCk+k+e+++kry+ + +++ +      s++ ++ +
  Neem_624_f_5  42 EWSEGAVSSLLEAYESKWVLRNRAKLKGHDWEEVARHVsaraNNTKSPKTQTQCKNKIESMKKRYRSESANADG------SSWLLYPR 123
                   5*************************************87766777788999***************9988876......24666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-2040125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDKENNQENH PSLLLPNHKE ESPKKTFGGG GGSSNDRLKR DEWSEGAVSS LLEAYESKWV  60
LRNRAKLKGH DWEEVARHVS ARANNTKSPK TQTQCKNKIE SMKKRYRSES ANADGSSWLL  120
YPRLDLLLRG SSAAAPQPLP PPHQQQQLSV NPPLVLLETS QTAMEQPIPP APAVPLPPPP  180
QPAPPTGTAQ NSHGSNGVDH RTAKVSLCI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022743989.11e-72trihelix transcription factor ASIL2-like
TrEMBLA0A371E9U63e-73A0A371E9U6_MUCPR; Trihelix transcription factor ASIL2 (Fragment)
STRINGPOPTR_0003s19470.18e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-51sequence-specific DNA binding transcription factors