PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6278_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 160aa MW: 18408.8 Da PI: 9.5639

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6278_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.9	2.7e-28	39	120	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li++rrem+ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++++ s +++y+++++ Neem_6278_f_1 39 WVQDETRILIAFRREMDGLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHQDRGS---GSAKMSYYKEID 120 ******************************************************************84...556899*997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-5	29	100	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.502	31	95	IPR017877	Myb-like domain
SMART	SM00717	1.3E-5	35	97	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.37E-5	36	99	IPR009057	Homeodomain-like
CDD	cd12203	8.97E-28	37	102	No hit	No description
Pfam	PF13837	1.3E-22	38	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MIIEVASNGD LQPQQMILGD SSGGEDHEVK APKKRAETWV QDETRILIAF RREMDGLFNT 60 SKSNKHLWEQ ISAKMREKGF DRSPTMCTDK WRNLLKEFKK AKHQDRGSGS AKMSYYKEID 120 EILKERSKNS QYKTSSVPNS ANKVDTYMQF SDKGLYGDGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	1e-54	33	118	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006438124.1	1e-100	trihelix transcription factor GT-1 isoform X2
Refseq	XP_006484031.1	1e-100	trihelix transcription factor GT-1-like isoform X2
Swissprot	Q9FX53	1e-76	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A067GQN0	4e-99	A0A067GQN0_CITSI; Uncharacterized protein
TrEMBL	V4VFT0	5e-99	V4VFT0_9ROSI; Uncharacterized protein
STRING	XP_006438124.1	1e-100	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.3	3e-81	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]