PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6332_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LSD
Protein Properties Length: 158aa    MW: 16715.5 Da    PI: 8.0767
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6332_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.11.4e-132852125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr+lL YP GA+sV+Ca+C++V
  Neem_6332_f_1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                   ************************9 PP
2zf-LSD146.65.5e-156791125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggC+tlL+Y rGA+sV+C++C+tV
  Neem_6332_f_1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                   ************************9 PP
3zf-LSD141.71.9e-13105129125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Cr lL+Y +GA+sV+Ca+C++V
  Neem_6332_f_1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                    ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.1E-122555IPR005735Zinc finger, LSD1-type
PfamPF069431.6E-102852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.0E-146493IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.2E-12102130IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-12105129IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MPVPLAPYPS PPAPYTPPAN GAQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT GVGVGYHHHP LTILSNLGLN KYYRTEVQ
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021827383.17e-90protein LOL1
RefseqXP_021827384.17e-90protein LOL1
RefseqXP_021827385.17e-90protein LOL1
SwissprotQ93ZB13e-75LOL1_ARATH; Protein LOL1
TrEMBLA0A314YTU12e-88A0A314YTU1_PRUYE; Protein LOL1
STRINGXP_008238278.14e-89(Prunus mume)
STRINGXP_006485443.14e-89(Citrus sinensis)
STRINGEMJ109433e-89(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72932643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-61lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]