PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6353_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 145aa    MW: 17325.1 Da    PI: 10.7699
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6353_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.17.3e-161988263
       trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykk 63
                   Wt++e+  Li+a+++++ +l+rg+lk+ +Weev+  +        ++ +  +s  qC++k+++l+kr  +
  Neem_6353_f_1 19 WTHEETVNLIQAYQDRWYSLKRGNLKASQWEEVAVIValrcsyddHSNPSAKSGSQCRHKIKKLRKRLAA 88
                   ********************************************99********************9655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1211183IPR017877Myb-like domain
PfamPF138378.8E-131790No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGLQCHKNLR MKKTQPNPWT HEETVNLIQA YQDRWYSLKR GNLKASQWEE VAVIVALRCS  60
YDDHSNPSAK SGSQCRHKIK KLRKRLAAEM REFAERLDRI EKRKIEMIRE SGRWRMEMES  120
KRIQMIVDSQ RKIVDIISNI FPGKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018818022.17e-33PREDICTED: trihelix transcription factor ASIL1
TrEMBLA0A2Z6MMQ93e-36A0A2Z6MMQ9_TRISU; Uncharacterized protein
STRINGSolyc06g083430.1.12e-30(Solanum lycopersicum)
STRINGPGSC0003DMT4000517882e-30(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.17e-19Trihelix family protein