PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6380_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WOX
Protein Properties Length: 284aa    MW: 31674.8 Da    PI: 7.1879
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6380_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-183191256
                   T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
       Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                   ++R+t+t++q+++L+el+++   r p+ae++++++++l    +++ ++V++WFqN +a+e+
  Neem_6380_f_1 31 CPRWTPTTDQVRILKELYYNngVRSPTAEQIQKISARLrqygKIEGKNVFYWFQNYKARER 91
                   58****************98678************************************98 PP
2Wus_type_Homeobox106.31.9e-343094265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +++RWtPt++Q++iL+ely+ +G+r+P++e+iq+i+a+L++yGkie+kNVfyWFQN kaRer k+
      Neem_6380_f_1 30 TCPRWTPTTDQVRILKELYYnNGVRSPTAEQIQKISARLRQYGKIEGKNVFYWFQNYKARERLKK 94
                       579***************9779****************************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.38E-101794IPR009057Homeodomain-like
PROSITE profilePS500719.6532793IPR001356Homeobox domain
SMARTSM003891.6E-42997IPR001356Homeobox domain
CDDcd000869.29E-73294No hitNo description
PfamPF000464.3E-163291IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.8E-73291IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEHQQHQNQH QPNGNCGGGS GKGNCHCRPT CPRWTPTTDQ VRILKELYYN NGVRSPTAEQ  60
IQKISARLRQ YGKIEGKNVF YWFQNYKARE RLKKKIEGNT NTITTDVSMQ RAANTAWKHE  120
EFIEKPLSQN ISSGVGVSTP SPTFTVYTVG QLGDHGYGPV IMEKSFRDCS ISSGGNFDGP  180
RCQNISWVGI DPHPSSYIYF GVKKSEDDVK EEVEQEDAPD IETLPLFPMH GEDNINSYGR  240
NRRNSSGYYP GWYGSSDDGS SSSSSCASLE LTLNSYNGRS SGSM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1360201e-105KJ136020.1 Citrus sinensis x Citrus trifoliata WUSCHEL mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275847.11e-113WUSCHEL-like protein
SwissprotQ8LL115e-75WUS_PETHY; Protein WUSCHEL
TrEMBLA0A2H5PZI01e-111A0A2H5PZI0_CITUN; Uncharacterized protein
STRINGXP_006466941.11e-112(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52442847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-33WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]