PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6384_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 181aa    MW: 20503.2 Da    PI: 7.7745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6384_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11960255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                   r+  + +Er+RR++++  ++eL +l+P+ +   p +  s  + L +A +YIk Lq
  Neem_6384_f_1  9 RTDRKTIERNRRNQMKALYSELNSLVPHqR---PVEATSLPDQLGEAANYIKRLQ 60
                   778899**********************66...9999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-12574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.60E-6564No hitNo description
PROSITE profilePS5088811.363759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-8960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-11983IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-41365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MENNPSSSRT DRKTIERNRR NQMKALYSEL NSLVPHQRPV EATSLPDQLG EAANYIKRLQ  60
TNLERMKERK DRLMGIEKLD RRINSEAMTG FRSPQIKIHE LDSVLEVVLI TGLDCQFMFS  120
ETIRLLHEEG AEIVNASFNV VEDPVFHTIH SKVGDSASSG SHGAARISER LKKLVNDASA  180
F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449353.18e-95transcription factor bHLH162
RefseqXP_006449355.18e-95transcription factor bHLH162
SwissprotF4JIJ75e-46BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A2H5N2R82e-93A0A2H5N2R8_CITUN; Uncharacterized protein
TrEMBLV4W8P12e-93V4W8P1_9ROSI; Uncharacterized protein
STRINGXP_006449353.13e-94(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12782592
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-46bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]