PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6468_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 210aa    MW: 22851 Da    PI: 6.9674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6468_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.65.2e-302104198
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C+++C+l++++      ++q++++ +v+k+FG++ ++++++a+pe++r+ +++sl++eA  r+ +Pv+Gavg++++++++++q++
  Neem_6468_f_2   2 SCNGCRVLRKGCSENCILRQCLqwigtSQAQANATVFVAKFFGRAGLMSFISAVPESQRPSLFQSLLFEAVGRTVNPVSGAVGLLWTGNWNICQAA 97 
                    6*********************9999888999**************************************************************** PP

         DUF260  92 aelallk 98 
                    +e++l +
  Neem_6468_f_2  98 VETVLCG 104
                    9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.1461107IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR QCLQWIGTSQ AQANATVFVA KFFGRAGLMS FISAVPESQR  60
PSLFQSLLFE AVGRTVNPVS GAVGLLWTGN WNICQAAVET VLCGGKLHPL PYSLVAELDD  120
MSESAVNCNK PREDNSLSLK GKADFDDDRE AERFIQQPRS DLDLGLTAGL PMKRRAATPS  180
EESVTTTSVT GSVNCSSEGR EERKLLRLFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422841.18e-99LOB domain-containing protein 38
RefseqXP_006422842.18e-99LOB domain-containing protein 38
RefseqXP_024035294.18e-99LOB domain-containing protein 38
SwissprotQ9SN236e-67LBD38_ARATH; LOB domain-containing protein 38
TrEMBLV4SGB82e-97V4SGB8_9ROSI; Uncharacterized protein
STRINGXP_006422841.13e-98(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2310744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.16e-67LOB domain-containing protein 37