PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6667_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family B3
Protein Properties Length: 185aa    MW: 21124.7 Da    PI: 9.8205
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6667_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.96.7e-1270162398
                    EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
                     +l +s+v  + +l+lp k + ++  +++        + + ++++W++ +  + ++g   + ++Wk+F+ +n+Lk+gD +vF+l+  + ++ +++v
  Neem_6667_f_1  70 MILAKSHVQPLYQLMLPAKMT-AIlpSLE--I---PAFLTYKSKEWQMLYHGEVCKG-KRFDTNWKKFATDNKLKVGDGCVFELIeCSsEKIKFRV 158
                    567788888888999999987.5533222..2...35677899*******5555544.47999********************9954446666666 PP

                    EEE- CS
             B3  95 kvfr 98 
                    +++r
  Neem_6667_f_1 159 QILR 162
                    6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1464162IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.08E-1664164IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-1466162No hitNo description
SMARTSM010190.004168164IPR003340B3 DNA binding domain
PROSITE profilePS5086310.29268164IPR003340B3 DNA binding domain
PfamPF023622.8E-1068161IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MPFASAFQRI RVLRAWLFVL KTSALGSSSG KGVKNAQFRD QQFPNASKHI AIELQGDEFW  60
PLSGKPYFTM ILAKSHVQPL YQLMLPAKMT AILPSLEIPA FLTYKSKEWQ MLYHGEVCKG  120
KRFDTNWKKF ATDNKLKVGD GCVFELIECS SEKIKFRVQI LRGDIPSKFE DKTNGESENM  180
PIIIE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956135.11e-71B3 domain-containing protein Os04g0386900-like
TrEMBLA0A067E2E38e-66A0A067E2E3_CITSI; Uncharacterized protein (Fragment)
TrEMBLA0A2H5NSN62e-65A0A2H5NSN6_CITUN; Uncharacterized protein (Fragment)
STRINGXP_006484742.15e-71(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1865456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-07B3 family protein