PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_6707_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WOX
Protein Properties Length: 287aa    MW: 32576 Da    PI: 5.988
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_6707_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.91.2e-1184124339
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC...TS CS
       Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl...gL 39 
                    +R+++t+eql +Leel+++ +r+p ae+++++A++l   gL
  Neem_6707_f_3  84 SRWNPTPEQLLALEELYRRgTRTPCAEQIQQIATQLrrfGL 124
                    7*****************99***************966644 PP
2Wus_type_Homeobox53.46.3e-1883123343
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyG 43 
                        ++RW+PtpeQ+  Leely++G+rtP +e+iq+i+++L+++G
      Neem_6707_f_3  83 SSRWNPTPEQLLALEELYRRGTRTPCAEQIQQIATQLRRFG 123
                        68**************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-582120IPR009057Homeodomain-like
PfamPF000463.1E-984124IPR001356Homeobox domain
CDDcd000860.006685137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSVARDEEFN NMPTDSSNTT VITPLIPNPN SSHPKDTNIS EIPSYCSFSS HSTNLLTLNH  60
HLANVATADR QTKTEFIEQP LGSSRWNPTP EQLLALEELY RRGTRTPCAE QIQQIATQLR  120
RFGLRKTSYD IEQTKNWATS SSCSKYSEEL VSMHRAVAIA ESTSGPQFGW TQFDERELQQ  180
RKSANITAEM MHATWHTMKL PRTSTQNLGG FSLLKPYQAE DFTNFLHHQE NGETQTLQLF  240
PLHSDDDYDS VNATKKDNKT VNITSINDTN NFTPSPSQYI EFLPLKN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006448244.11e-112WUSCHEL-related homeobox 6
TrEMBLA0A067FBD51e-111A0A067FBD5_CITSI; Uncharacterized protein
STRINGXP_006448244.11e-111(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1804879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-15WUSCHEL related homeobox 1