PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6790_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 209aa MW: 23986.2 Da PI: 7.7386

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6790_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.7	2.5e-32	3	130	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 p+G+ F P+d+elv +yLk+kv++ ++ +++ike+++y++eP++Lp ++++++++ yfF+ ++++ +g+r nr++ g+W++tg+ + ++ Neem_6790_f_1 3 PAGVGFYPEDKELVFHYLKRKVSDGEN--FRFIKELELYDHEPSKLPsLAHESGHSKSYFFALLQRSHLQGNRINRQVPGGFWRKTGSPAFINDEA 96 89*******************9993..368***********55667788899********************************** PP NAM 97 gelvglkktLvfykg..rapkgektdWvmheyrl 128 g+ + +k++L++yk ++ ++ekt W+m+ey l Neem_6790_f_1 97 GTRIATKTSLAYYKRdpTSDRSEKTGWLMKEYML 130 *********7534667789*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-31	2	137	IPR003441	NAC domain
PROSITE profile	PS51005	32.38	2	152	IPR003441	NAC domain
Pfam	PF02365	5.3E-17	3	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MFPAGVGFYP EDKELVFHYL KRKVSDGENF RFIKELELYD HEPSKLPSLA HESGHSKSYF 60 FALLQRSHLQ GNRINRQVPG GFWRKTGSPA FINDEAGTRI ATKTSLAYYK RDPTSDRSEK 120 TGWLMKEYML VESQPPHRND KESDRMAPVD YSIMEVIGSE YTLPSNSANS NAFSFPFAPV 180 DYSIMVQNYL PMCLQLASYL FIIPAKSQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-19	2	139	20	152	NAC domain-containing protein 19
3swm_B	2e-19	2	139	20	152	NAC domain-containing protein 19
3swm_C	2e-19	2	139	20	152	NAC domain-containing protein 19
3swm_D	2e-19	2	139	20	152	NAC domain-containing protein 19
3swp_A	2e-19	2	139	20	152	NAC domain-containing protein 19
3swp_B	2e-19	2	139	20	152	NAC domain-containing protein 19
3swp_C	2e-19	2	139	20	152	NAC domain-containing protein 19
3swp_D	2e-19	2	139	20	152	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024042455.1	9e-41	uncharacterized protein LOC18043989 isoform X2
TrEMBL	V4TLA9	4e-39	V4TLA9_9ROSI; Uncharacterized protein
STRING	XP_006437371.1	7e-40	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18525	2	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	3e-21	NAC domain containing protein 58