PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_6855_f_10

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 292aa MW: 31072.9 Da PI: 4.9807

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_6855_f_10	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.2	5.2e-07	146	185	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+ri +++ L+el+P++ K + a++L + v+Y+k L Neem_6855_f_10 146 QLRRERIAERMRALQELVPSC-----NKTDRAAMLDEIVDYVKFL 185 67****************8.....6**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.817	136	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-6	142	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.2E-12	145	198	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-4	146	185	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-11	146	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.49E-8	148	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MAAGNGQEGL GDDFFEQILS VPTGYGEPPT GSASTMPMLL QLGSGSGGGG GGDASGGDDM 60 RSLAMGIRMG MMPLGLNLEH GFLRQHEDHN SNSNSHNASS SPNNSSTTSG INERDSVHMP 120 SLFPAFGQLP TQSVRPSPPR PLQVHQLRRE RIAERMRALQ ELVPSCNKTD RAAMLDEIVD 180 YVKFLRLQVK VLSMSRLGAA GAVAQLVADV PLSSAEGESI DGGSNQAAWE KWSSDGTEQQ 240 VAKLMEEDVG AAMQFLQSKA LCIMPISLAN AIYRAHQPEP PAYIKPESNT PS

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432927.1	1e-140	transcription factor UNE12 isoform X1
Refseq	XP_006471682.1	1e-140	transcription factor UNE12-like isoform X1
Swissprot	O22768	8e-69	UNE12_ARATH; Transcription factor UNE12
TrEMBL	V4SZB6	1e-139	V4SZB6_9ROSI; Uncharacterized protein
STRING	XP_006471682.1	1e-139	(Citrus sinensis)
STRING	XP_006432927.1	1e-139	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1611	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.2	1e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]