PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_696_f_5
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NF-YB
Protein Properties Length: 150aa    MW: 16923.7 Da    PI: 5.3389
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_696_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB172.64.2e-5417112297
         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                   +eqdr+lPianv+rimk++lPanakisk+aket+qec+sefisfvtseas+kc++e+rkt+ngdd++walatlGf+dy+ p++ yl+kyreleg++
  Neem_696_f_5  17 KEQDRLLPIANVGRIMKQILPANAKISKEAKETMQECASEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAGPIRRYLHKYRELEGDR 112
                   89********************************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-5412140IPR009072Histone-fold
SuperFamilySSF471138.68E-4119135IPR009072Histone-fold
PfamPF008081.4E-272286IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.7E-185068No hitNo description
PROSITE patternPS0068505369IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.7E-186987No hitNo description
PRINTSPR006159.7E-1888106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVDHIGGSAS SEHGGIKEQD RLLPIANVGR IMKQILPANA KISKEAKETM QECASEFISF  60
VTSEASEKCR KERRKTVNGD DICWALATLG FDDYAGPIRR YLHKYRELEG DRANNNQQEK  120
ATNDNSNNEE NEESPYHDTE QQVNRGVIKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B1e-4316107192Transcription factor HapC (Eurofung)
4g92_B1e-4316107192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021608716.12e-77nuclear transcription factor Y subunit B-5-like
SwissprotO822482e-57NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLA0A2C9WB974e-76A0A2C9WB97_MANES; Uncharacterized protein
STRINGcassava4.1_018746m6e-77(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25528229
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-59nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]