PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7053_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 381aa MW: 43572.8 Da PI: 8.1463

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7053_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	8.7e-05	139	162	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C Cg++F +++ L++H + H Neem_7053_f_1 139 YLCRVCGRRFYTNEKLVNHFKQiH 162 56*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.6E-7	117	188	IPR029060	PIN domain-like
SuperFamily	SSF57667	2.66E-5	136	165	No hit	No description
PROSITE profile	PS50157	12.154	139	167	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	141	162	IPR007087	Zinc finger, C2H2
CDD	cd06167	2.95E-16	156	291	No hit	No description
Pfam	PF01936	7.6E-8	211	291	IPR021139	NYN domain, limkain-b1-type
Gene3D	G3DSA:3.40.50.1010	1.6E-7	224	279	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MGEANRFNPI SQGFPKFHNI CNTANFTSLK SLNPLISFSR SFHLGSQNPL STLAPEHAHD 60 NVGIFWDLDN KPPISVPPFE AAIKLKKSIS SFGVVRYMVA YANSHAFSYV PQVVREQRKE 120 RKLLNQLENK GVIKPAEPYL CRVCGRRFYT NEKLVNHFKQ IHEREQKKRL NQIESARGKR 180 RVHLVAKYSM KMEKYKRAAR DVVTPKVGYG LADELKRAGF WVRTVCDKPQ AADVALRDHM 240 VDMMDKRRVE CLVLVSDDSD FVEVLKEAKL RCLKTVVVGD INDGALKRVA DAGFCWRDIL 300 MGKAKKEALS VVDKWKDQDI LKMLEWKYNP EVEKNACDWD DDESEDADID NIAGANDAQC 360 MQKEDSGVWW ELESSDVDET S

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MGEANRFNPI SQGFPKFHNI CNTANFTSLK SLNPLISFSR SFHLGSQNPL STLAPEHAHD  60
NVGIFWDLDN KPPISVPPFE AAIKLKKSIS SFGVVRYMVA YANSHAFSYV PQVVREQRKE  120
RKLLNQLENK GVIKPAEPYL CRVCGRRFYT NEKLVNHFKQ IHEREQKKRL NQIESARGKR  180
RVHLVAKYSM KMEKYKRAAR DVVTPKVGYG LADELKRAGF WVRTVCDKPQ AADVALRDHM  240
VDMMDKRRVE CLVLVSDDSD FVEVLKEAKL RCLKTVVVGD INDGALKRVA DAGFCWRDIL  300
MGKAKKEALS VVDKWKDQDI LKMLEWKYNP EVEKNACDWD DDESEDADID NIAGANDAQC  360
MQKEDSGVWW ELESSDVDET S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440402.1	0.0	uncharacterized protein LOC18046927
TrEMBL	V4TJU6	0.0	V4TJU6_9ROSI; Uncharacterized protein
STRING	XP_006440402.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11444	28	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12240.1	1e-148	C2H2 family protein