PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7148_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 258aa    MW: 28824.7 Da    PI: 7.8426
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7148_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.7e-18165199135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Neem_7148_f_1 165 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 199
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-831254IPR016679Transcription factor, GATA, plant
SMARTSM004011.4E-16159209IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.385163195IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-14163197IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.76E-14163222No hitNo description
CDDcd002022.43E-13164211No hitNo description
PfamPF003206.8E-16165199IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDMYGPSTTT AAQDLFRIDD LLDFSNDEIF SSSSSAVTTA NNNTTAVTTD IKQLPPLQNS  60
SIHSSLSTDF TDDLCVPSDD VAELEWLSQF VDDSFTEFPT SSITGTLTVR SDTSGRGRSK  120
RSKATNSVAN PTTWNWTSME SGNSKQKRET HRQSSPTPDG GVRRCTHCAS EKTPQWRTGP  180
LGPKTLCNAC GVRYKSGRLV PEYRPAASPT FVLTQHSNSH RKVLELRRQK ELLRQQQQQQ  240
QQQGQGQIYR HQRDFEVC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445338.11e-120GATA transcription factor 4
RefseqXP_006490843.11e-120GATA transcription factor 4
SwissprotO497412e-77GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A067HCR11e-119A0A067HCR1_CITSI; GATA transcription factor
TrEMBLV4TE111e-119V4TE11_9ROSI; GATA transcription factor
STRINGXP_006490843.11e-120(Citrus sinensis)
STRINGXP_006445338.11e-120(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.15e-75GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]