PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7148_f_6
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 412aa    MW: 44581.6 Da    PI: 6.0435
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7148_f_6genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.70.000492672843855
                    STCHHHHHHHHHHHHHHH CS
            HLH  38 lsKaeiLekAveYIksLq 55 
                     +Ka++L +++eY+k+Lq
  Neem_7148_f_6 267 TDKASMLDEVIEYLKQLQ 284
                    79***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.0E-6258294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-6264312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00134267288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSQCVPSWDL DDNPTYSRNS LRSRSNSTAA PDVPMLDYEV AELTWENGQL AMHGLRPPRV  60
PSKPEANTSP TKYTWEKPRA SGTLESIVNQ ATSLPQRKPP FDSHSTDELA PWFNQQRAAA  120
AASATMTMDA LVPCSNRSED RTTHVMDPVP GLGAVGKCVV DCSTRVGSCS GPVASKEEEL  180
LLTGKRARSA RVPVAPEWSS RDQSVSGSAT FGRESQHVTH DTHDMEMGVG FTSTSMGSPE  240
NTSSSKQGTK ATTADDHDSV CHGRPSTDKA SMLDEVIEYL KQLQAQVQMM SRMNMPPHMM  300
LPMTMQQQLQ MSMMAPMGMG MGMGMGMGMG MGMGMGMGVM DMNNIGRPNI TGMPPVLSNP  360
FMPPMTSWDG SAGDPLSAFF ACQSQPMTMD AYSRMAAMYQ QMQKTPASSS KS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007052181.21e-175PREDICTED: transcription factor UNE10 isoform X2
TrEMBLA0A061E2381e-175A0A061E238_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3
STRINGXP_002511647.11e-174(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-60bHLH family protein