PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_720_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 291aa MW: 33122.3 Da PI: 6.9389

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_720_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17	1.1e-05	181	220	11	55
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 rR +++ +++ L++l+ + +K + a++L++A YIk Lq Neem_720_f_4 181 RRSQKLSDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 220 7999************99.....9**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.572	170	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.12E-5	181	224	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.3E-8	181	241	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-9	181	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MRNTIFNSVS PQLYNFGNNE VQMPNLDMSM QVDSIITNVH RNGFSTDSRL FKDDNQLRDG 60 GFAVTRQSLI NNYPQDFQSI TTSCDNVSQQ YSSLLSQKRS LPQFDVDSES LQNARIHGTE 120 ANDLVRRGGI VDGLAYDKIA LNVSKKISRK KIKVNSSCEE QWPLQVEETS TEIQDHKVPV 180 RRSQKLSDKI TALQKLVSPY GKTDTASVLQ EASLYIKLLQ DQIQNLFQML SSSYTNVRAL 240 NSQELEEEEE QVDLRSKGLC LVPISFIQKV TKENLIDPHT ISRKINLDKR F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024957130.1	1e-120	transcription factor bHLH133-like isoform X2
TrEMBL	A0A2H5NYP8	1e-103	A0A2H5NYP8_CITUN; Uncharacterized protein (Fragment)
STRING	XP_006486499.1	1e-91	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17246	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31730.1	1e-19	bHLH family protein