PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7353_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 306aa MW: 33317.8 Da PI: 6.9141

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7353_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.8	6.9e-31	98	157	1	59
---SS-EEEEEEE--TT-SS-E.EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefpr.sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++pr sYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+ Neem_7353_f_1 98 LDDGYRWRKYGQKVVKGNPNPRwSYYKCTSAGCTVRKHVERASHDLKSVITTYEGKHNHD 157 59******************99*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.8E-35	83	159	IPR003657	WRKY domain
SuperFamily	SSF118290	1.16E-26	90	159	IPR003657	WRKY domain
PROSITE profile	PS50811	36.024	93	159	IPR003657	WRKY domain
SMART	SM00774	7.6E-35	98	158	IPR003657	WRKY domain
Pfam	PF03106	8.6E-23	99	157	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009942	Biological Process	longitudinal axis specification
GO:0030010	Biological Process	establishment of cell polarity
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
TSSASVGPEY CNQSSSLPAQ NSNHIESGDA VDASSTFSND EDEDDRATHG SIGYDGEEDE 60 SESKRRKIEA YATEMSGATR AIREPRVVVQ TTSEVDILDD GYRWRKYGQK VVKGNPNPRW 120 SYYKCTSAGC TVRKHVERAS HDLKSVITTY EGKHNHDVPA ARNSSHVNSG NSNAVTAHAA 180 AAGQIHRPEP SQIHNSMARF DRPASFGSFR VPGRQQLGPS SGFSFGVNQP GLANLAMAGL 240 SPGQAELPVL PVHPYLAQQR QVSEMSFMMP KGEPKMEPMS EPGLNLSNRS AVYQQLMSRL 300 PLGPQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-37	89	160	8	78	Probable WRKY transcription factor 4
2lex_A	2e-37	89	160	8	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269\|PubMed:21316593}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00071	PBM	Transfer from AT5G56270	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM469534	1e-64	AM469534.1 Vitis vinifera contig VV78X089168.35, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006474751.1	0.0	probable WRKY transcription factor 2 isoform X1
Refseq	XP_015384697.1	0.0	probable WRKY transcription factor 2 isoform X2
Swissprot	Q9FG77	1e-102	WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBL	A0A2H5NBW9	0.0	A0A2H5NBW9_CITUN; Uncharacterized protein
TrEMBL	A0A2H5NBX4	0.0	A0A2H5NBX4_CITUN; Uncharacterized protein
TrEMBL	A0A2H5NC89	0.0	A0A2H5NC89_CITUN; Uncharacterized protein
TrEMBL	A0A2H5NCS5	0.0	A0A2H5NCS5_CITUN; Uncharacterized protein
STRING	XP_006474751.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7954	27	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	2e-95	WRKY DNA-binding protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ueda M, et al. Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote. Genes Dev., 2017. 31(6): p. 617-627 [PMID:28404632] Lei R, et al. Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function. Plant J., 2017. 91(6): p. 962-976 [PMID:28635025]