PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7400_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 222aa    MW: 26520.1 Da    PI: 5.5176
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7400_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.57.9e-17610832128
            NAM  32 evikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfy........kgrapk 115
                    + i e+d+y+++P++L+  ++v+  ++e +++  r++       ++ +  +g Wkatg+ k+++++  ++ lvg k+ L+f+        + r++k
  Neem_7400_f_1   6 HLIVETDVYEFDPQRLQwdHNVALPNNEKFYYYLREHD------SREVLGQGWWKATGHLKKIYTNfnNQLLVGFKRPLTFHryrddddfERRRKK 95 
                    3499************9533555566677666666553......344889***************9766777**********88887777689999 PP

            NAM 116 gektdWvmheyrl 128
                    ++kt+W+m ey+l
  Neem_7400_f_1  96 AVKTNWIMYEYSL 108
                    9**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.2871123IPR003441NAC domain
SuperFamilySSF1019415.49E-203123IPR003441NAC domain
PfamPF023652.3E-635108IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MHLHDHLIVE TDVYEFDPQR LQWDHNVALP NNEKFYYYLR EHDSREVLGQ GWWKATGHLK  60
KIYTNFNNQL LVGFKRPLTF HRYRDDDDFE RRRKKAVKTN WIMYEYSLAS YSVEGRLCKI  120
RYKGKPSAQE EHENIRKASS QPAQELQRIS QANFAHSCDG ESQQTEGHSS QMETIENEQQ  180
QPIAFYDPLY DHFDDDQLEQ FADSSEQLFP NIWSWHADQD GV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043277.17e-61NAC domain-containing protein 72-like
RefseqXP_024950105.18e-61NAC domain-containing protein 83-like
STRINGXP_006495018.14e-60(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.13e-11NAC domain containing protein 94