PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_7436_f_11

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

HB-other

Protein Properties

Length: 445aa MW: 49675.2 Da PI: 7.7875

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_7436_f_11	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.6	1.2e-09	387	441	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+++ eq++ L+ F + + ++ +++ +L+++ gL +qV+vWF+Nr a ek+ Neem_7436_f_11 387 KRRKLGIEQVQLLKLNFGNYHQLKFDRKGQLSSEHGLYPCQVSVWFHNRSACEKR 441 7889999******************************************988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07000	5.9E-52	38	369	IPR010733	Protein of unknown function DUF1308
PROSITE profile	PS50071	10.544	382	442	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.1E-7	384	441	IPR009057	Homeodomain-like
CDD	cd00086	6.00E-5	387	443	No hit	No description
Pfam	PF00046	7.1E-7	387	441	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.4E-8	388	442	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MEEAEAIKRR CRDAIHRIER LPSSTKITES CKKTLLRLAN SELNFFSRLT SPIPLSSNIG 60 HLEAVVFVLQ QPFITGISRV CKTIRNGLKS VHVDVVCTLN KNPVWIIVSD RNPRYISWNG 120 CPKNKGLKLR VEEILAAAGT SQSLKPFSVI LFFSNGLGNF VRERLCNEFG ASEVSLSEFE 180 FCEEVEDEWI NVHPRLFDEA CVLEIKLDFT GNDVLNSECG VKNLVIAAAA FNLEEKNTEV 240 NLGDAFGSLL SRMKLSSLGE PDHLLNGVDL INFDTTALIA LVSGISNGCA EKILATPDIE 300 LRQQFKGNTQ FVIAQAMSEV QSPIDEELGG VIAGKRGMIC ESVLSEFKEL VLMCGGPNEK 360 LRADELLKFF IWRKKNKGAQ TNITSAKRRK LGIEQVQLLK LNFGNYHQLK FDRKGQLSSE 420 HGLYPCQVSV WFHNRSACEK RSHSG

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MEEAEAIKRR CRDAIHRIER LPSSTKITES CKKTLLRLAN SELNFFSRLT SPIPLSSNIG  60
HLEAVVFVLQ QPFITGISRV CKTIRNGLKS VHVDVVCTLN KNPVWIIVSD RNPRYISWNG  120
CPKNKGLKLR VEEILAAAGT SQSLKPFSVI LFFSNGLGNF VRERLCNEFG ASEVSLSEFE  180
FCEEVEDEWI NVHPRLFDEA CVLEIKLDFT GNDVLNSECG VKNLVIAAAA FNLEEKNTEV  240
NLGDAFGSLL SRMKLSSLGE PDHLLNGVDL INFDTTALIA LVSGISNGCA EKILATPDIE  300
LRQQFKGNTQ FVIAQAMSEV QSPIDEELGG VIAGKRGMIC ESVLSEFKEL VLMCGGPNEK  360
LRADELLKFF IWRKKNKGAQ TNITSAKRRK LGIEQVQLLK LNFGNYHQLK FDRKGQLSSE  420
HGLYPCQVSV WFHNRSACEK RSHSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	372	389	RKKNKGAQTNITSAKRRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006441476.1	0.0	uncharacterized protein LOC18050013 isoform X2
Refseq	XP_006441482.1	0.0	uncharacterized protein LOC18050013 isoform X2
TrEMBL	V4TMU0	0.0	V4TMU0_9ROSI; Uncharacterized protein
TrEMBL	V4VP93	0.0	V4VP93_9ROSI; Uncharacterized protein
STRING	XP_006441476.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	4e-12	homeobox protein 40