PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_745_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 666aa MW: 75524.1 Da PI: 6.6758

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_745_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.1	2.7e-109	291	660	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 +lL++cA+av+s d + ++ lL+++++ ++p+gd +qRla+yf+++L+arla++ ++ps +++++++ l+a+ ++ +sP+ k s++++N Neem_745_f_1 291 SLLTQCAQAVASYDRRTTNGLLKQIRQYSTPHGDGTQRLAHYFANGLEARLAGTA---TPYFSPSFLNRTSVADLLKAYMAYISASPFRKASNFLTN 384 79*************************************************33...3345677777778********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 ++I +a+ + +r+HiiDf+is+GlQWp+++q + Rp+gpp++RiTg++ p++g +e++e+tg+rL+k+ e+++vpf++n+ +a+++e+l++e+L Neem_745_f_1 385 RTIGKAAGKTTRIHIIDFGISYGLQWPCFIQRQSFRPGGPPKIRITGIELPQPGfrPAERVEATGRRLKKVSERCNVPFDYNA-IAQKWETLTYEDL 480 *************************************************9*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +++++E+++V ++++l +l+d++v ++s+rd+vLkl+k+++P+++v+ + +ns+ F+ rf eal ++salfd++ea++++e++ r+ Ere++g Neem_745_f_1 481 KIDRDEVTIVTCMYRLNNLPDDTVLIKSPRDAVLKLIKRINPDLFVHGVTNGTYNSPFFFSRFREALLHFSALFDMFEATVSSEDQGRMIFEREVIG 577 ********************************************************************************************* PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 r+++nvvaceg er+ et+++W++r +aGF+++pl+++ k+++ ++++ + + + ++e+ +++++gWk++ ++++S+W+ Neem_745_f_1 578 RQAMNVVACEGLERTDSPETYKQWQARNLRAGFRQLPLDQELFKKVRNMVKMEYHRDFVIDENGHWMLQGWKGKVIYALSFWK 660 **************************************************999***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.786	263	640	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.2E-107	291	660	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MDLTNQTPSS YSAPSLGTSS DGDSPYDCEN INFSYAVYKY IDDILMEEDV DGLQATEKSF 60 YDVLGQKYPP STNDHSPCIN QNGGSPDDNF VCSSRIGSND SYTATNNLVD SSWIRHQPEF 120 QSHLLQTSDV DCPESPLLLP NLHSEMQPFG HSRVGRYGDR ATSAPMSNSL KSLVIEKEVV 180 TESEKEEGNY SSDGLRERKN YRHEDGDCLE AERSSKHSVI LLEESEESDL FDKVMIPKGG 240 NYDSVPCPLF EAARNIVGLK FPHNEKIKGP NSRIMRMMKQ GNTSKLADLW SLLTQCAQAV 300 ASYDRRTTNG LLKQIRQYST PHGDGTQRLA HYFANGLEAR LAGTATPYFS PSFLNRTSVA 360 DLLKAYMAYI SASPFRKASN FLTNRTIGKA AGKTTRIHII DFGISYGLQW PCFIQRQSFR 420 PGGPPKIRIT GIELPQPGFR PAERVEATGR RLKKVSERCN VPFDYNAIAQ KWETLTYEDL 480 KIDRDEVTIV TCMYRLNNLP DDTVLIKSPR DAVLKLIKRI NPDLFVHGVT NGTYNSPFFF 540 SRFREALLHF SALFDMFEAT VSSEDQGRMI FEREVIGRQA MNVVACEGLE RTDSPETYKQ 600 WQARNLRAGF RQLPLDQELF KKVRNMVKME YHRDFVIDEN GHWMLQGWKG KVIYALSFWK 660 PVSVEN

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MDLTNQTPSS YSAPSLGTSS DGDSPYDCEN INFSYAVYKY IDDILMEEDV DGLQATEKSF  60
YDVLGQKYPP STNDHSPCIN QNGGSPDDNF VCSSRIGSND SYTATNNLVD SSWIRHQPEF  120
QSHLLQTSDV DCPESPLLLP NLHSEMQPFG HSRVGRYGDR ATSAPMSNSL KSLVIEKEVV  180
TESEKEEGNY SSDGLRERKN YRHEDGDCLE AERSSKHSVI LLEESEESDL FDKVMIPKGG  240
NYDSVPCPLF EAARNIVGLK FPHNEKIKGP NSRIMRMMKQ GNTSKLADLW SLLTQCAQAV  300
ASYDRRTTNG LLKQIRQYST PHGDGTQRLA HYFANGLEAR LAGTATPYFS PSFLNRTSVA  360
DLLKAYMAYI SASPFRKASN FLTNRTIGKA AGKTTRIHII DFGISYGLQW PCFIQRQSFR  420
PGGPPKIRIT GIELPQPGFR PAERVEATGR RLKKVSERCN VPFDYNAIAQ KWETLTYEDL  480
KIDRDEVTIV TCMYRLNNLP DDTVLIKSPR DAVLKLIKRI NPDLFVHGVT NGTYNSPFFF  540
SRFREALLHF SALFDMFEAT VSSEDQGRMI FEREVIGRQA MNVVACEGLE RTDSPETYKQ  600
WQARNLRAGF RQLPLDQELF KKVRNMVKME YHRDFVIDEN GHWMLQGWKG KVIYALSFWK  660
PVSVEN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-47	295	663	25	382	Protein SCARECROW
5b3h_A	3e-47	295	663	24	381	Protein SCARECROW
5b3h_D	3e-47	295	663	24	381	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488667.1	0.0	scarecrow-like protein 9
Refseq	XP_024035700.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	1e-167	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A067G375	0.0	A0A067G375_CITSI; Uncharacterized protein
TrEMBL	A0A2H5NDV5	0.0	A0A2H5NDV5_CITUN; Uncharacterized protein
STRING	XP_006488667.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3646	25	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-165	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]