PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_745_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 803aa    MW: 89893 Da    PI: 4.9852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_745_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.41.2e-1134278001373
          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                   l++lL+ cA+avss+d + a++lL+++++++sp+gd  qRla++f+++L+ar+a+ ++++ + +++   + k+ ++ l+a+k++  ++P+ k++ + 
  Neem_745_f_2 427 LRTLLILCAQAVSSNDWRTANELLKQIRQHSSPSGDGSQRLAHCFANGLEARMAGGGTGIKNYFSCFIPK-KSATDMLKAYKVYLSACPFKKLAMFF 522
                   5789*************************************************************99997.7899********************** PP

          GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                   aN++I++  e+++++Hi+Df+i +G+QWp L+q L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLak++e+++vpfe+n ++++++e++++e
  Neem_745_f_2 523 ANRMIMNVSENATTLHIVDFGILYGFQWPVLIQLLSMRPSGPPKLRITGIELPQPGfrPAERIEETGRRLAKYCERFKVPFEYNGIASQNWETIQIE 619
                   *******************************************************9******************************999******** PP

          GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                   +L+++p+E+laVn  ++ ++llde+v+++ +r++vL+l+++++P+++v +  + ++n++ F++rf ea+ ++s+lfd+++a+++re+ er + Ere+
  Neem_745_f_2 620 DLKINPNEVLAVNALFRFKNLLDETVEVNCPRNTVLSLIRKMNPDIFVNSIVNGSYNAPFFVTRFREAIFHFSSLFDMFDATISREDPERLMFEREF 716
                   ************************************************************************************************* PP

          GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    gre++nv+aceg er+er et+++W++r +++GFk++pl+ + +k+ +  l+  + + + ++e+s+++++gWk+r +++ S+W
  Neem_745_f_2 717 YGREAMNVIACEGLERVERPETYKQWQARSMRMGFKQLPLDAELMKKLRFKLKAWYHKDFVIDEDSNWMLQGWKGRIVYASSCW 800
                   ********************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.614401781IPR005202Transcription factor GRAS
PfamPF035144.1E-111427800IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MDSTGFSDLI SGFNLDDETL VPNSNQYSNL ENGFKFTIPS PDLNFLDIPF NRPNPDTGII  60
TSSSTSSPDL ESLGASTSLS PGGSSFAPST NWSPEGGASS PSDDSDSSDE VLKYITQILM  120
EEKMEEKPCM FYDPLALQAT ERSLYEVLAE QHPLYPSSLI QTQLSANLNS QSGENNNSFS  180
NSSSEFKSNS AAASSSNSDS SGFADTLLIG DARDHNPSLL QTPLPDDCHI QSNSQQSSVP  240
YSVNPPESMT ATGHGLMSSV NEFLAQNMFS DQQSVLQFKK GMEEASKFLP TGNQLIIDLE  300
SYGFTVEKKE DTSKVVVKVE KDDKEYSPEG SKGRKNHQRE DIDLEEGRSN KQSALYVEES  360
ELSDMFDKVL LIHTDENGKP VMCIDKDRSK TLETGATNSL QQNGQSNGSG GRSRAKKQGN  420
KKETVDLRTL LILCAQAVSS NDWRTANELL KQIRQHSSPS GDGSQRLAHC FANGLEARMA  480
GGGTGIKNYF SCFIPKKSAT DMLKAYKVYL SACPFKKLAM FFANRMIMNV SENATTLHIV  540
DFGILYGFQW PVLIQLLSMR PSGPPKLRIT GIELPQPGFR PAERIEETGR RLAKYCERFK  600
VPFEYNGIAS QNWETIQIED LKINPNEVLA VNALFRFKNL LDETVEVNCP RNTVLSLIRK  660
MNPDIFVNSI VNGSYNAPFF VTRFREAIFH FSSLFDMFDA TISREDPERL MFEREFYGRE  720
AMNVIACEGL ERVERPETYK QWQARSMRMG FKQLPLDAEL MKKLRFKLKA WYHKDFVIDE  780
DSNWMLQGWK GRIVYASSCW VPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-494108021379Protein SCARECROW
5b3h_D7e-494108021379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488348.10.0scarecrow-like protein 33 isoform X1
RefseqXP_024957660.10.0scarecrow-like protein 33 isoform X2
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLV4SGX80.0V4SGX8_9ROSI; Uncharacterized protein
STRINGXP_006488348.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]